updated executable paths

BlauGroup · Aug 5, 2024 · ce7fbc1 · ce7fbc1
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Showing 3 changed files with 8 additions and 9 deletions.
diff --git a/GMC.md b/GMC.md
@@ -119,7 +119,7 @@ To access the makefile, enter the `GMC` folder:
 $ cd GMC
 ```
 
-Next create an executable with the makefile. The executable will be located in the `GMC` folder.
+Next create an executable with the makefile. The executable will be located in the `build` folder.
 
 ```
 $ make GMC
@@ -143,8 +143,7 @@ $ make help
 - <span style="color:#0066CC"> energy_budget </span>: allowed energy to be added into the system.
 - <span style="color:#0066CC"> checkpoint </span>: whether checkpointing should occur.
 
-
-When running `GMC` ensure that your input file paths are correct considering the executable is inside the build folder. Below is an example of how `GMC` can be run using the input files inside the <a href="{{ site.github.repository_url }}"> examples directory </a> (here `step_cutoff` is specified):
+When running `GMC` ensure that your input file paths are correct considering the executable is inside the `build` folder. Below is an example of how `GMC` can be run using the input files inside the <a href="{{ site.github.repository_url }}"> examples directory </a> (here `step_cutoff` is specified):
 
 ```
 build/GMC --reaction_database=examples/GMC/end-to-end-test/rn.sqlite --initial_state_database=examples/GMC/end-to-end-test/initial_state_copy.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --energy_budget=0 --checkpoint=1

diff --git a/LGMC.md b/LGMC.md
@@ -146,7 +146,7 @@ To access the makefile, enter the LGMC folder:
 $ cd LGMC
 ```
 
-Next create an executable with the makefile. The executable will be located in the LGMC folder.
+Next create an executable with the makefile. The executable will be located in the `build` folder.
 
 ```
 $ make LGMC
@@ -178,8 +178,8 @@ LGMC requires seven input arguments (either `step_cutoff` or `time_cutoff` must
     - <span style="color:#006633"> Is add site (T\|F) </span>
     - <span style="color:#006633"> Charge transfer style (M\|B) </span>
 
-When running LGMC ensure that your input file paths are correct considering the executable is inside the LGMC folder. Below is an example of how LGMC can be run using the input files inside the <a href="{{ site.github.repository_url }}"> examples directory </a> (here `step_cutoff` is specified):
+When running LGMC ensure that your input file paths are correct considering the executable is inside the `build` folder. Below is an example of how LGMC can be run using the input files inside the <a href="{{ site.github.repository_url }}"> examples directory </a> (here `step_cutoff` is specified):
 
 ```
-./LGMC --lattice_reaction_database=../examples/LGMC/CO_oxidation/rn.sqlite --initial_state_database=../examples/LGMC/CO_oxidation/initial_state.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --checkpoint=1 --parameters=../examples/LGMC/CO_oxidation/LGMC_params.txt
+build/LGMC --lattice_reaction_database=examples/LGMC/CO_oxidation/rn.sqlite --initial_state_database=examples/LGMC/CO_oxidation/initial_state.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --checkpoint=1 --parameters=examples/LGMC/CO_oxidation/LGMC_params.txt
 ```
diff --git a/NPMC.md b/NPMC.md
@@ -143,7 +143,7 @@ To access the makefile, enter the `NPMC` folder:
 $ cd NPMC
 ```
 
-Next create an executable with the makefile. The executable will be located in the `NPMC` folder.
+Next create an executable with the makefile. The executable will be located in the `build` folder.
 
 ```
 $ make NPMC
@@ -166,8 +166,8 @@ $ make help
 - <span style="color:#0066CC"> time_cutoff </span>: how much time in each simulation [s].
 - <span style="color:#0066CC"> checkpoint </span>: whether checkpointing should occur.
 
-When running `NPMC` ensure that your input file paths are correct considering the executable is inside the `NPMC` folder. Below is an example of how `NPMC` can be run using the input files inside the <a href="{{ site.github.repository_url }}"> examples directory </a> (here `step_cutoff` is specified):
+When running `NPMC` ensure that your input file paths are correct considering the executable is inside the `build` folder. Below is an example of how `NPMC` can be run using the input files inside the <a href="{{ site.github.repository_url }}"> examples directory </a> (here `step_cutoff` is specified):
 
 ```
-./NPMC --nano_particle_database=../examples/NPMC/np.sqlite --initial_state_database=../examples/NPMC/initial_state.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --checkpoint=1
+build/NPMC --nano_particle_database=examples/NPMC/np.sqlite --initial_state_database=examples/NPMC/initial_state.sqlite --number_of_simulations=1000 --base_seed=1000 --thread_count=8 --step_cutoff=200 --checkpoint=1
 ```