Collection of structures & TMAlign #38
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # To create a release, create a tag and push it to GitHub: | |
| #git tag -a "v0.0.1-beta" -m "beta version testing" | |
| #git push --tags | |
| name: Publish BioPandas to PyPI / GitHub | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test-style: | |
| name: Run style tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| cache: 'pip' | |
| - name: Install package dependencies for testing | |
| run: pip install .[test] | |
| - name: Run all the pytest tests | |
| run: flake8 ./biopandas | |
| test-pytest: | |
| name: Run pytest tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| cache: 'pip' | |
| - name: Install package dependencies for testing | |
| run: pip install .[test] | |
| - name: Run all the pytest tests | |
| run: pytest ./biopandas -sv | |
| build-n-publish: | |
| needs: [test-pytest] # only runs if tests are passing | |
| if: startsWith(github.ref, 'refs/tags/v') # Check if the tag starts with 'v' | |
| name: Build and publish to PyPI | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Build source and wheel distributions | |
| run: | | |
| python -m pip install --upgrade build twine | |
| python -m build | |
| twine check --strict dist/* | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| - name: Create GitHub Release | |
| id: create_release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # This token is provided by Actions, you do not need to create your own token | |
| with: | |
| tag_name: ${{ github.ref }} | |
| release_name: ${{ github.ref }} | |
| draft: false | |
| prerelease: true | |
| - name: Get Asset name | |
| run: | | |
| export PKG=$(ls dist/ | grep tar) | |
| set -- $PKG | |
| echo "name=$1" >> $GITHUB_ENV | |
| - name: Upload Release Asset (sdist) to GitHub | |
| id: upload-release-asset | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: dist/${{ env.name }} | |
| asset_name: ${{ env.name }} | |
| asset_content_type: application/zip |