fix: switch pytest to unittest #32
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| # To create a release, create a tag and push it to GitHub: | |
| #git tag -a "v0.0.1-beta" -m "beta version testing" | |
| #git push --tags | |
| name: Publish BioPandas to PyPI / GitHub | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test-style: | |
| name: Run style tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| cache: 'pip' | |
| - name: Install package dependencies for testing | |
| run: pip install .[test] | |
| - name: Run all the pytest tests | |
| run: flake8 ./biopandas | |
| test-pytest: | |
| name: Run pytest tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| cache: 'pip' | |
| - name: Install package dependencies for testing | |
| run: pip install .[test] | |
| - name: Run all the pytest tests | |
| run: pytest ./biopandas -sv | |
| build-n-publish: | |
| needs: [test-pytest] # only runs if tests are passing | |
| if: startsWith(github.ref, 'refs/tags/v') # Check if the tag starts with 'v' | |
| name: Build and publish to PyPI | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Build source and wheel distributions | |
| run: | | |
| python -m pip install --upgrade build twine | |
| python -m build | |
| twine check --strict dist/* | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| - name: Create GitHub Release | |
| id: create_release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # This token is provided by Actions, you do not need to create your own token | |
| with: | |
| tag_name: ${{ github.ref }} | |
| release_name: ${{ github.ref }} | |
| draft: false | |
| prerelease: true | |
| - name: Get Asset name | |
| run: | | |
| export PKG=$(ls dist/ | grep tar) | |
| set -- $PKG | |
| echo "name=$1" >> $GITHUB_ENV | |
| - name: Upload Release Asset (sdist) to GitHub | |
| id: upload-release-asset | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: dist/${{ env.name }} | |
| asset_name: ${{ env.name }} | |
| asset_content_type: application/zip |