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[WIP] PDB file handling enhancements #483

Merged
merged 36 commits into from
Aug 16, 2017
Merged

[WIP] PDB file handling enhancements #483

merged 36 commits into from
Aug 16, 2017

Commits on Jul 9, 2017

  1. Added option to download pdb to another directory

    Joel S committed Jul 9, 2017
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  2. Added option to download multiple pdb files

    Joel S committed Jul 9, 2017
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  3. Added option to get all PDB entries available in RCSB PDB

    Joel S committed Jul 9, 2017
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  4. Added option to download entire PDB files available in RCSB

    Joel S committed Jul 9, 2017
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Commits on Jul 11, 2017

  1. Added option to get status of new and modified pdb entries

    Joel S committed Jul 11, 2017
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Commits on Jul 12, 2017

  1. Updated docstrings

    Joel S committed Jul 12, 2017
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  2. Added option to overwrite existing PDB files when downloading

    Joel S committed Jul 12, 2017
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  3. Updated docstrings

    Joel S committed Jul 12, 2017
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  4. Added option to update PDB files based on weekly status list

    Joel S committed Jul 12, 2017
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Commits on Jul 16, 2017

  1. Added option to get all obsolete entries in PDB

    Joel S committed Jul 16, 2017
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  2. PDB directory automatically created if it does not exist

    Joel S committed Jul 16, 2017
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  3. Added option to download all obsolete pdb files from RCSB PDB server

    Joel S committed Jul 16, 2017
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  4. Updated docstrings

    Joel S committed Jul 16, 2017
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Commits on Jul 20, 2017

  1. Added obsolete pdb file handling

    Joel S committed Jul 20, 2017
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Commits on Jul 24, 2017

  1. minor enhancements on print statements

    Ubuntu authored and Ubuntu committed Jul 24, 2017
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Commits on Aug 3, 2017

  1. Updated comments and docstrings

    Joel S committed Aug 3, 2017
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  2. Added function retrievepdb to download and read PDB file 

    >Also added new Base.read() for reading PDB files with PDB ID and directory. 
>Bug Fixes
    Joel S committed Aug 3, 2017
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Commits on Aug 4, 2017

  1. Code Refactoring and recommended changes

    Joel S committed Aug 4, 2017
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Commits on Aug 5, 2017

  1. Overrided downloadpdb function for downloading multiple PDB files

    Joel S committed Aug 5, 2017
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  2. Added - download and update pdb files in PDB, XML and mmCIF formats

    Joel S committed Aug 5, 2017
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Commits on Aug 6, 2017

  1. Added - Download PDB,XML,mmCIF compressed and MMTF uncompressed format

    Joel S committed Aug 6, 2017
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Commits on Aug 7, 2017

  1. Recommended code fixes

    Joel S committed Aug 7, 2017
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Commits on Aug 8, 2017

  1. Minor Bug fixes and recommended changes

    Joel S committed Aug 8, 2017
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Commits on Aug 9, 2017

  1. Exception handling improvements and Minor fixes

    Joel S committed Aug 9, 2017
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  2. PDB Extraction fix-compatible for julia 0.5 & 0.6

    Joel S authored Aug 9, 2017
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Commits on Aug 10, 2017

  1. Updated Docstrings and Minor code changes

    Joel S committed Aug 10, 2017
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Commits on Aug 11, 2017

  1. Merge pull request #3 from BioJulia/master 

    Decompose Bio.Align and Bio.Intervals (BioJulia#482)
    Joel S authored Aug 11, 2017
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  2. simple ci test

    Joel S committed Aug 11, 2017
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Commits on Aug 12, 2017

  1. Test cases and Bug fixes

    Joel S committed Aug 12, 2017
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  2. Bug fixes and Test case updates

    Joel S committed Aug 12, 2017
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  3. Test - Fix

    Joel S committed Aug 12, 2017
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  4. Small test case added

    Joel S committed Aug 12, 2017
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  5. Merge branch 'pdb_test' into pdb_enhancements

    Joel S committed Aug 12, 2017
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Commits on Aug 13, 2017

  1. Added Documentation

    Joel S committed Aug 13, 2017
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Commits on Aug 15, 2017

  1. Updated docs and Minor code changes

    Joel S committed Aug 15, 2017
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  2. Minor document corrections

    Joel S committed Aug 15, 2017
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