test: bound SBO terms

ModelFiles/dependencies.txt

@@ -1,7 +1,7 @@
 MATLAB	9.7.0.1190202 (R2019b)
 libSBML	5.17.0
 RAVEN_toolbox	2.4.0
-COBRA_toolbox	commit 0303050
+COBRA_toolbox	commit 56f0e94
 SBML_level	3
 SBML_version	1
 fbc_version	2

ModelFiles/xml/yeastGEM.xml

@@ -58840,11 +58840,11 @@
       </species>
     </listOfSpecies>
     <listOfParameters>
-      <parameter id="FB1N1000" value="-1000" constant="true"/>
-      <parameter id="FB2N1" value="-1" constant="true"/>
-      <parameter id="FB3N0" value="0" constant="true"/>
-      <parameter id="FB4N1" value="0.7" constant="true"/>
-      <parameter id="FB5N1000" value="1000" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="FB1N1000" value="-1000" constant="true"/>
+      <parameter sboTerm="SBO:0000625" id="FB2N1" value="-1" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="FB3N0" value="0" constant="true"/>
+      <parameter sboTerm="SBO:0000625" id="FB4N1" value="0.7" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="FB5N1000" value="1000" constant="true"/>
     </listOfParameters>
     <listOfReactions>
       <reaction metaid="r_0001" sboTerm="SBO:0000176" id="r_0001" name="(R)-lactate:ferricytochrome-c 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB3N0" fbc:upperFluxBound="FB5N1000">

README.md

@@ -10,7 +10,7 @@ This repository contains the current consensus genome-scale metabolic model of _
 
 **GEM Category:** species; **Utilisation:** experimental data reconstruction, multi-omics integrative analysis, _in silico_ strain design, model template; **Field:** metabolic-network reconstruction; **Type of Model:** reconstruction, curated; **Model Source:** YeastMetabolicNetwork; **Omic Source:** genomics, metabolomics; **Taxonomy:** _Saccharomyces cerevisiae_; **Metabolic System:** general metabolism; **Bioreactor**; **Strain:** S288C; **Condition:** aerobic, glucose-limited, defined media;
 
-* Last update: 2020-09-18
+* Last update: 2020-10-05
 
 * Main Model Descriptors: