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Simplify Beer, fixes #114 #134

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Oct 18, 2021
Merged

Simplify Beer, fixes #114 #134

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5135154
move exp info from model to condition table
FFroehlich Oct 11, 2021
daf4d9f
fixup
FFroehlich Oct 11, 2021
a1997c4
fix model
FFroehlich Oct 11, 2021
3b26f27
fix model
FFroehlich Oct 11, 2021
da9a2de
fix model
FFroehlich Oct 11, 2021
3d542fc
fix model
FFroehlich Oct 11, 2021
c72fc61
fix model
FFroehlich Oct 11, 2021
c120dc2
fix model
FFroehlich Oct 11, 2021
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40 changes: 20 additions & 20 deletions Benchmark-Models/Beer_MolBioSystems2014/experimentalCondition_Beer_MolBioSystems2014.tsv
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Original file line number Diff line number Diff line change
@@ -1,20 +1,20 @@
conditionId conditionName switch_Bacmax_typeIDT1_ExpID1 switch_Bacmax_typeIDT1_ExpID2 switch_Bacmax_typeIDT1_ExpID3 switch_Bacmax_typeIDT1_ExpID4 switch_Bacmax_typeIDT1_ExpID5 switch_Bacmax_typeIDT1_ExpID6 switch_Bacmax_typeIDT3_ExpID1 switch_Bacmax_typeIDT3_ExpID2 switch_Bacmax_typeIDT3_ExpID3 switch_Bacmax_typeIDT3_ExpID4 switch_Bacmax_typeIDT3_ExpID5 switch_Bacmax_typeIDT3_ExpID6 switch_Bacmax_typeIDT5_ExpID1 switch_Bacmax_typeIDT5_ExpID2 switch_Bacmax_typeIDT5_ExpID3 switch_Bacmax_typeIDT5_ExpID4 switch_Bacmax_typeIDT5_ExpID5 switch_Bacmax_typeIDT5_ExpID6 switch_Bacmax_typeIDwt_ExpID4 switch_beta_typeIDT1_ExpID1 switch_beta_typeIDT1_ExpID2 switch_beta_typeIDT1_ExpID3 switch_beta_typeIDT1_ExpID4 switch_beta_typeIDT1_ExpID5 switch_beta_typeIDT1_ExpID6 switch_beta_typeIDT3_ExpID1 switch_beta_typeIDT3_ExpID2 switch_beta_typeIDT3_ExpID3 switch_beta_typeIDT3_ExpID4 switch_beta_typeIDT3_ExpID5 switch_beta_typeIDT3_ExpID6 switch_beta_typeIDT5_ExpID1 switch_beta_typeIDT5_ExpID2 switch_beta_typeIDT5_ExpID3 switch_beta_typeIDT5_ExpID4 switch_beta_typeIDT5_ExpID5 switch_beta_typeIDT5_ExpID6 switch_beta_typeIDwt_ExpID4 switch_kdegi_typeIDT1 switch_kdegi_typeIDT3 switch_kdegi_typeIDT5 switch_kdegi_typeIDwt switch_kdim_typeIDT1 switch_kdim_typeIDT3 switch_kdim_typeIDT5 switch_kdim_typeIDwt switch_ksyn_typeIDT1 switch_ksyn_typeIDT3 switch_ksyn_typeIDT5 switch_ksyn_typeIDwt switch_tau_typeIDT1_ExpID1 switch_tau_typeIDT1_ExpID2 switch_tau_typeIDT1_ExpID3 switch_tau_typeIDT1_ExpID4 switch_tau_typeIDT1_ExpID5 switch_tau_typeIDT1_ExpID6 switch_tau_typeIDT3_ExpID1 switch_tau_typeIDT3_ExpID2 switch_tau_typeIDT3_ExpID3 switch_tau_typeIDT3_ExpID4 switch_tau_typeIDT3_ExpID5 switch_tau_typeIDT3_ExpID6 switch_tau_typeIDT5_ExpID1 switch_tau_typeIDT5_ExpID2 switch_tau_typeIDT5_ExpID3 switch_tau_typeIDT5_ExpID4 switch_tau_typeIDT5_ExpID5 switch_tau_typeIDT5_ExpID6 switch_tau_typeIDwt_ExpID4
model1_data1 condition1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
model1_data2 condition2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
model1_data3 condition3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
model1_data4 condition4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
model1_data5 condition5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
model1_data6 condition6 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
model1_data7 condition7 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
model1_data8 condition8 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
model1_data9 condition9 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
model1_data10 condition10 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
model1_data11 condition11 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
model1_data12 condition12 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
model1_data13 condition13 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
model1_data14 condition14 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
model1_data15 condition15 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
model1_data16 condition16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
model1_data17 condition17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
model1_data18 condition18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
model1_data19 condition19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
conditionId conditionName Bacmax beta kdegi kdim ksyn tau
typeIDwt_ExpID4 typeID=wt,ExpID=4 Bacmax_typeIDwt_ExpID4 beta_typeIDwt_ExpID4 kdegi_typeIDwt kdim_typeIDwt ksyn_typeIDwt tau_typeIDwt_ExpID4
typeIDT1_ExpID1 typeID=T1,ExpID=1 Bacmax_typeIDT1_ExpID1 beta_typeIDT1_ExpID1 kdegi_typeIDT1 kdim_typeIDT1 ksyn_typeIDT1 tau_typeIDT1_ExpID1
typeIDT1_ExpID2 typeID=T1,ExpID=2 Bacmax_typeIDT1_ExpID2 beta_typeIDT1_ExpID2 kdegi_typeIDT1 kdim_typeIDT1 ksyn_typeIDT1 tau_typeIDT1_ExpID2
typeIDT1_ExpID3 typeID=T1,ExpID=3 Bacmax_typeIDT1_ExpID3 beta_typeIDT1_ExpID3 kdegi_typeIDT1 kdim_typeIDT1 ksyn_typeIDT1 tau_typeIDT1_ExpID3
typeIDT1_ExpID4 typeID=T1,ExpID=4 Bacmax_typeIDT1_ExpID4 beta_typeIDT1_ExpID4 kdegi_typeIDT1 kdim_typeIDT1 ksyn_typeIDT1 tau_typeIDT1_ExpID4
typeIDT1_ExpID5 typeID=T1,ExpID=5 Bacmax_typeIDT1_ExpID5 beta_typeIDT1_ExpID5 kdegi_typeIDT1 kdim_typeIDT1 ksyn_typeIDT1 tau_typeIDT1_ExpID5
typeIDT1_ExpID6 typeID=T1,ExpID=6 Bacmax_typeIDT1_ExpID6 beta_typeIDT1_ExpID6 kdegi_typeIDT1 kdim_typeIDT1 ksyn_typeIDT1 tau_typeIDT1_ExpID6
typeIDT3_ExpID1 typeID=T3,ExpID=1 Bacmax_typeIDT3_ExpID1 beta_typeIDT3_ExpID1 kdegi_typeIDT3 kdim_typeIDT3 ksyn_typeIDT3 tau_typeIDT3_ExpID1
typeIDT3_ExpID2 typeID=T3,ExpID=2 Bacmax_typeIDT3_ExpID2 beta_typeIDT3_ExpID2 kdegi_typeIDT3 kdim_typeIDT3 ksyn_typeIDT3 tau_typeIDT3_ExpID2
typeIDT3_ExpID3 typeID=T3,ExpID=3 Bacmax_typeIDT3_ExpID3 beta_typeIDT3_ExpID3 kdegi_typeIDT3 kdim_typeIDT3 ksyn_typeIDT3 tau_typeIDT3_ExpID3
typeIDT3_ExpID4 typeID=T3,ExpID=4 Bacmax_typeIDT3_ExpID4 beta_typeIDT3_ExpID4 kdegi_typeIDT3 kdim_typeIDT3 ksyn_typeIDT3 tau_typeIDT3_ExpID4
typeIDT3_ExpID5 typeID=T3,ExpID=5 Bacmax_typeIDT3_ExpID5 beta_typeIDT3_ExpID5 kdegi_typeIDT3 kdim_typeIDT3 ksyn_typeIDT3 tau_typeIDT3_ExpID5
typeIDT3_ExpID6 typeID=T3,ExpID=6 Bacmax_typeIDT3_ExpID6 beta_typeIDT3_ExpID6 kdegi_typeIDT3 kdim_typeIDT3 ksyn_typeIDT3 tau_typeIDT3_ExpID6
typeIDT5_ExpID1 typeID=T5,ExpID=1 Bacmax_typeIDT5_ExpID1 beta_typeIDT5_ExpID1 kdegi_typeIDT5 kdim_typeIDT5 ksyn_typeIDT5 tau_typeIDT5_ExpID1
typeIDT5_ExpID2 typeID=T5,ExpID=2 Bacmax_typeIDT5_ExpID2 beta_typeIDT5_ExpID2 kdegi_typeIDT5 kdim_typeIDT5 ksyn_typeIDT5 tau_typeIDT5_ExpID2
typeIDT5_ExpID3 typeID=T5,ExpID=3 Bacmax_typeIDT5_ExpID3 beta_typeIDT5_ExpID3 kdegi_typeIDT5 kdim_typeIDT5 ksyn_typeIDT5 tau_typeIDT5_ExpID3
typeIDT5_ExpID4 typeID=T5,ExpID=4 Bacmax_typeIDT5_ExpID4 beta_typeIDT5_ExpID4 kdegi_typeIDT5 kdim_typeIDT5 ksyn_typeIDT5 tau_typeIDT5_ExpID4
typeIDT5_ExpID5 typeID=T5,ExpID=5 Bacmax_typeIDT5_ExpID5 beta_typeIDT5_ExpID5 kdegi_typeIDT5 kdim_typeIDT5 ksyn_typeIDT5 tau_typeIDT5_ExpID5
typeIDT5_ExpID6 typeID=T5,ExpID=6 Bacmax_typeIDT5_ExpID6 beta_typeIDT5_ExpID6 kdegi_typeIDT5 kdim_typeIDT5 ksyn_typeIDT5 tau_typeIDT5_ExpID6
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