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Fujita_SciSignal2010 test data #131

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merged 3 commits into from
Oct 22, 2021
Merged

Fujita_SciSignal2010 test data #131

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131ef9d
add test data; input function to model
dilpath Apr 28, 2021
489551d
Merge branch 'master' into fujita_test_data
dilpath May 7, 2021
b777c7c
remove zero padding from condition names
dilpath Oct 22, 2021
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2 changes: 1 addition & 1 deletion Benchmark-Models/Fujita_SciSignal2010/Fujita_SciSignal2010.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ problems:
- condition_files:
- experimentalCondition_Fujita_SciSignal2010.tsv
measurement_files:
- measurementData_Fujita_SciSignal2010.tsv
- measurementData_step_Fujita_SciSignal2010.tsv
observable_files:
- observables_Fujita_SciSignal2010.tsv
sbml_files:
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24 changes: 17 additions & 7 deletions Benchmark-Models/Fujita_SciSignal2010/experimentalCondition_Fujita_SciSignal2010.tsv
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Original file line number Diff line number Diff line change
@@ -1,7 +1,17 @@
conditionId conditionName EGF
model1_data1 EGF 0.1 ng/ml 0.1
model1_data2 EGF 0.3 ng/ml 0.3
model1_data3 EGF 1 ng/ml 1
model1_data4 EGF 3 ng/ml 3
model1_data5 EGF 10 ng/ml 10
model1_data6 EGF 30 ng/ml 30
conditionId conditionName EGF_0 EGF_rate EGF_end
condition_step_00_1 EGF 00.1 ng/mL 0.1 0.0 3600
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condition_step_00_3 EGF 00.3 ng/mL 0.3 0.0 3600
condition_step_01_0 EGF 01.0 ng/mL 1.0 0.0 3600
condition_step_03_0 EGF 03.0 ng/mL 3.0 0.0 3600
condition_step_10_0 EGF 10.0 ng/mL 10.0 0.0 3600
condition_step_30_0 EGF 30.0 ng/mL 30.0 0.0 3600
condition_pulse_00_1 EGF 00.1 ng/mL 0.1 0.0 60
condition_pulse_00_3 EGF 00.3 ng/mL 0.3 0.0 60
condition_pulse_01_0 EGF 01.0 ng/mL 1.0 0.0 60
condition_pulse_03_0 EGF 03.0 ng/mL 3.0 0.0 60
condition_pulse_10_0 EGF 10.0 ng/mL 10.0 0.0 60
condition_pulse_30_0 EGF 30.0 ng/mL 30.0 0.0 60
condition_ramp_8_3Enegative06 EGF 8.3E-06 ng/mL/s 0.0 8.333333333333334e-06 3600
condition_ramp_8_3Enegative05 EGF 8.3E-05 ng/mL/s 0.0 8.333333333333333e-05 3600
condition_ramp_8_3Enegative04 EGF 8.3E-04 ng/mL/s 0.0 0.0008333333333333333 3600
condition_ramp_8_3Enegative03 EGF 8.3E-03 ng/mL/s 0.0 0.008333333333333333 3600
145 changes: 0 additions & 145 deletions Benchmark-Models/Fujita_SciSignal2010/measurementData_Fujita_SciSignal2010.tsv
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