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Update README.md
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shajoezhu committed Aug 26, 2014
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Expand Up @@ -49,7 +49,7 @@ Options | Useage |
-mm STR/FLT | Multiple merger parameters are defined by a single numerical constant, or a string which speifies the parameter on each branch. The string can be input through command line or a file. By **default**, Kingman coalescent is used.|
-S INT INT ... | Specify the number of samples for each taxon.|
-num INT | The number of gene trees will be simulated.|
-seed INT | User define random SEED|
-seed INT | User define random seed|
-mu FLT | User defined constant mutation rate per locus. By **default** mutation rate 0.00005 is used.|
-o STR _[option]_ | Specify the file name prefix for simulated gene trees. Prefix is set as "OUT" by **default**, When options are not specified, only output trees with branch lengths are in coalescent unit.|
-_sim\_mut\_unit_ | Convert the simulated gene tree branch lengths to mutation unit.|
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