around_target.py bug fix (#331)

BayraktarLab · Nov 8, 2023 · 3af08a1 · 3af08a1
1 parent 50a218e
commit 3af08a1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cell2location/cell_comm/around_target.py b/cell2location/cell_comm/around_target.py
@@ -72,8 +72,8 @@ def compute_weighted_average_around_target(
         source_names = genes_to_use_as_source
         # if using gene symbols get var names:
         if gene_symbols is not None:
-            genes_to_use_as_source = adata.var_names[adata.var[gene_symbols].isin(genes_to_use_as_source).values]
             source_names = adata.var[gene_symbols][adata.var[gene_symbols].isin(genes_to_use_as_source).values]
+            genes_to_use_as_source = adata.var_names[adata.var[gene_symbols].isin(genes_to_use_as_source).values]
 
     cell_abundance_key_ = cell_abundance_quantile_key + cell_abundance_key
     cell_abundance_key = cell_abundance_quantile_key + "_" + cell_abundance_key