New release 1.6.5

• Removed compilant parameter from prokka.
• Fixed docker file : perl module incompatibility

New version .- v1.6.4

• Updated Dockerfile
• Migrated tests to github actions
• Updated environment.yml for conda.
• Fixed issues #12,#14,#15,#17. Cases with no plasmids or too many. Relative paths in html images.

v1.6.3

• remove test code

v1.6.2

• html unescape fix

v1.6.0

Added

• Compatible with SMRT sequencing technology
• Improved summary report and NEW HTML report for better results interpretation
• Improved plasmid database clustering based on kmer

v1.5.2 2020-04-02

Added

• Bioconda guidelines compatibility
• Improved plasmid database download script

1.5.0 2020-03-16

Added

• Conda compatibility
• Kmer based prefiltering

1.4.2 - 2018-09-29

Added

• Specific config file for only reconstruct parameter

Fixed

• Protein databases can be properly used
• Fixed bug in blast_to_complete.sh, space in file name.
• Fixed issues with circleci.

Release v1.4.1

Fixed

• Fixed minor bug in circleci config file.

Release v1.4.0

Added

• Automatically annotated genes/cds are displayed differently depending on whether they are located in forward or reverse.
• Psi-cd-hit and blast now handle threads.
• Improved error handling.
• Docker/Singularity compatibility.
• One multifasta file per reference plasmid is generated with all the similar contigs from the sample.
• Quick staus of values applied to plasmid reconstruction.
• CircleCI testing and deployment added.
• Possibility to choose different circos config file.

Fixed

• Some plasmids from the database were not annotated
• Limit sample name to 37 characters, capped by prokka
• Bug in complete contig track generator that took the wrong value and couldn't draw sequences that matched the position 0 of plasmid#
• Other minor fixes.