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Lablog_viralrecon is now able to download references from ncbi that don't belong to any family #310

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merged 7 commits into from
Aug 16, 2024

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@jaimeozaez jaimeozaez commented Aug 12, 2024

Lablog viralrecon tries to identify to which family all new references to be downloaded belong. If the reference does not belong to any family, it fails.
Now, references that do not belong to any family are stored in "miscellaneous" folder.

PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (black and flake8).
  • If a new tamplate was added make sure:
    • Template's schema is added in templates/services.json.
    • Template's pipeline's documentation in assets/reports/md/template.md is added.
    • Results Documentation in assets/reports/results/template.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).
  • If you know a new user was added to the SFTP, make sure you added it to templates/sftp_user.json

@jaimeozaez jaimeozaez self-assigned this Aug 12, 2024
@jaimeozaez jaimeozaez marked this pull request as ready for review August 16, 2024 08:57
@jaimeozaez jaimeozaez merged commit 802c5e3 into BU-ISCIII:develop Aug 16, 2024
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2 participants