construct.yaml

name: ABBA-Python-0.9.11.dev0
version: 0.9.11.dev0

channels:
  - conda-forge
  - defaults

specs:
  - python=3.12.4
  - pip=24.0
  - pyimagej=1.5.0
  - brainglobe-atlasapi=2.0.11
  - openjdk=8 # jvm not recognized with higher versions
  - maven
  - conda=24.7.1 # also necessary for extr envs
  - console_shortcut # [win]
  - menuinst # [win]

extra_envs:
  deepslice:
    specs:
      - python=3.7.12
      - mkl
      - numpy=1.21.6
      - pandas=1.3.5
      - scikit-image=0.17.2
      - scikit-learn=0.23.2
      - scipy=1.6.0
#     - tensorflow=1.14.0 # modif 1: otherwise the predictions from DeepSlice are bad with nan values everywhere
      - tqdm=4.56.0
      - h5py=2.10.0 # modif 2: seems required for deepslice, otherwise a keras decode utf8 error is raised
      - openssl=1.1.1q # modif 3: dll not loaded error with netcdf4 on windows
      - netcdf4=1.5.7
    channels:
      - conda-forge

register_python: false
initialize_conda: false

company: BIOP-EPFL

extra_files:
  - abba-pack-win.tar.gz # [win]
  
welcome_image: img/logo128x128.png # [win]
header_image: img/logo.png # [win]
icon_image: img/logo128x128.png # [win]

post_install: post_install_unix.sh   # [unix]
post_install: post_install_win.bat  # [win]

# TODO : pre_uninstall to remove extra shortcuts in windows