Refine vignettes

BIMSBbioinfo · Jan 9, 2025 · 045c83b · 045c83b
1 parent 605e740
commit 045c83b
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Showing 5 changed files with 8 additions and 5 deletions.
diff --git a/R/example.R b/R/example.R
@@ -9,6 +9,8 @@
 #' @importFrom stats rpois
 #' @importFrom S4Vectors DataFrame
 #' @importFrom withr with_seed
+#' @param seed The seed for the random number generator. Because this function
+#' is only used locally, we allow to set a set within the function.
 #' @return A SingleCellExperiment object
 #' @examples
 #' sce <- sce_example()

diff --git a/anglemania.Rproj b/anglemania.Rproj
@@ -16,5 +16,5 @@ BuildType: Package
 PackageUseDevtools: Yes
 PackageInstallArgs: --no-build-vignettes
 PackageBuildArgs: --no-build-vignettes
-PackageCheckArgs: --as-cran
+PackageCheckArgs: --as-cran --no-build-vignettes
 PackageRoxygenize: rd,collate,namespace,vignette
diff --git a/vignettes/Functions_Showcasing.Rmd b/vignettes/Functions_Showcasing.Rmd
@@ -15,7 +15,7 @@ vignette: >
 ---
 ```{r setup, include=FALSE}
 knitr::opts_chunk$set(echo = TRUE)
-.libPaths(.Library)
+# .libPaths(.Library)
 ```
 
 # Introduction

diff --git a/vignettes/anglemania_tutorial.Rmd b/vignettes/anglemania_tutorial.Rmd
@@ -1,5 +1,5 @@
 ---
-title: "anglemania_tutorial_SCE"
+title: "Running anglemania with SingleCellExperiment"
 date: "`r Sys.Date()`"
 output:
   html_document:
@@ -15,7 +15,7 @@ vignette: >
 ---
 ```{r setup, include=FALSE}
 knitr::opts_chunk$set(echo = TRUE)
-.libPaths(.Library)
+# .libPaths(.Library)
 ```
 
 # Introduction

diff --git a/vignettes/anglemania_tutorial_Seurat.Rmd b/vignettes/anglemania_tutorial_Seurat.Rmd
@@ -1,5 +1,5 @@
 ---
-title: "anglemania_tutorial_Seurat"
+title: "Running anglemania with Seurat"
 date: "`r Sys.Date()`"
 output:
   html_document:
@@ -16,6 +16,7 @@ vignette: >
 
 ```{r setup, include=FALSE}
 knitr::opts_chunk$set(echo = TRUE)
+# .libPaths(.Library)
 ```
 
 # Introduction