add missing script

BCCDC-PHL · May 31, 2024 · fbcd181 · fbcd181
1 parent 3f09cbb
commit fbcd181
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diff --git a/.github/scripts/create_output_checking_environment.sh b/.github/scripts/create_output_checking_environment.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+
+conda env create -f .github/environments/check-outputs.yml
diff --git a/.github/scripts/prepare_artifacts.sh b/.github/scripts/prepare_artifacts.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+artifacts_dir="artifacts"
+
+echo "Prepare artifacts .." >> ${artifacts_dir}/test.log
+
+mkdir -p ${artifacts_dir}/fastq
+
+mv .github/data/fastq/*.fastq.gz ${artifacts_dir}/fastq
+
+mkdir -p ${artifacts_dir}/pipeline_outputs
+
+mv .github/data/test_output/* ${artifacts_dir}/pipeline_outputs
Original file line number	Diff line number	Diff line change
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		#!/bin/bash

		conda env create -f .github/environments/check-outputs.yml