Fix numpy depreciation: np.matrix -> np.array
#1218
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Closes #1213 Also moves from `np.dot` to matrix multiplication operator `@`.
drvinceknight
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marcharper
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Oct 30, 2018
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Closes #1213
The main changes here are in
eigen.pyandtest_eigen.py.With 683194c I've also run through
blackand it seemed to change a few other files (I can revert that if this makes the diff a pain).