add gadi config

conf/gadi.config

@@ -0,0 +1,42 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Nextflow config file for running full-size tests
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Defines input files and everything required to run a full size pipeline test.
+
+    Use as follows:
+        nextflow run nf-core/proteinfold -profile test_full_alphafold2_split,<docker/singularity> --outdir <OUTDIR>
+
+----------------------------------------------------------------------------------------
+*/
+
+
+if (params.use_gpu) { singularity.runOptions = '--nv' }
+singularity.cacheDir = "/g/data/if89/singularity_cache/"
+params {
+    mode            = 'alphafold2'
+    alphafold2_mode = 'split_msa_prediction'
+    input           = 'https://raw.githubusercontent.com/nf-core/test-datasets/proteinfold/testdata/samplesheet/v1.0/samplesheet.csv'
+    alphafold2_db   = '/g/data/if89/alphafold2/standard/'
+    use_dgxa100 = false
+}
+
+process {
+    storage = "gdata/if89+scratch/${params.project}"
+
+    if (params.use_gpu) {
+        withName: 'RUN_ALPHAFOLD2_PRED|RUN_ALPHAFOLD2' {
+                if (params.use_dgxa100){
+                    queue = "dgxa100"
+                    cpus = 16
+                }else{
+                    queue = "gpuvolta"
+                    cpus = 12
+                }
+
+                gpus = 1
+
+        }
+    }
+
+}

nextflow.config

@@ -253,6 +253,10 @@ profiles {
     test_full_colabfold_multimer  { includeConfig 'conf/test_full_colabfold_webserver_multimer.config' }
     test_full_esmfold             { includeConfig 'conf/test_full_esmfold.config'                      }
     test_full_esmfold_multimer    { includeConfig 'conf/test_full_esmfold_multimer.config'             }
+    gadi {
+        includeConfig 'https://raw.githubusercontent.com/nf-core/configs/master/conf/nci_gadi.config'
+        includeConfig 'conf/gadi.config'
+    }
 }
 
 // Set default registry for Apptainer, Docker, Podman and Singularity independent of -profile