Ensimpl

===================

This is a python package that makes it simple to use Ensembl data.

To Setup

Run docker compose to start the server, to run in the background use the -d flag.

docker compose up -d --build

Create the database

The configuration file is located in ensimpl/config/ensimpl.ensembl.conf. Add more rows to add more databases.

docker compose exec ensimpl python3 /app/ensimpl/cli.py create -v -d /data

Project Structure

• README.md - This file.
• DEV.md - Development notes and guidelines.
• docker-compose.yml & Dockerfile - Docker configuration for container setup.
• requirements.txt - List of Python dependencies.
• setup.py - Setup script for the project installation.

ensimpl/

• __init__.py, utils.py, main.py, fastapi_utils.py, cli.py - Core application and CLI setup.
• db/ - Database interaction modules.
• routers/ - API routing.
• static/ & templates/ - Front-end assets and HTML templates.
• config/ - Configuration files.