Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

FEAT: add skeleton for amico implementation #89

Open
wants to merge 31 commits into
base: master
Choose a base branch
from
Open

FEAT: add skeleton for amico implementation #89

Show file tree
Hide file tree
Changes from 2 commits
Commits
Show all changes
31 commits
Select commit Hold shift + click to select a range
3b8210a
FEAT: add skeleton for amico implementation
matteofrigo Apr 30, 2020
1a72f0d
add dmipy.utils.build_sphere.get_sphere function
matteofrigo Apr 30, 2020
f12ce31
remove AMICO-SM and add change definition of parameters in AMICO
matteofrigo May 10, 2020
3fa0f81
add details to AMICO skeleton
matteofrigo May 17, 2020
090b123
Merge branch 'master' of github.com:AthenaEPI/dmipy into amico
matteofrigo May 24, 2020
66f67e6
Merge branch 'master' of github.com:AthenaEPI/dmipy into amico
matteofrigo Jun 3, 2020
6a101b2
implemented predict and check orientations for AMICO
matteofrigo Jun 3, 2020
4ef1dbe
add comments to prepare amico interface
matteofrigo Jun 4, 2020
0278fa1
add specifications about interfacing amico solver
matteofrigo Jun 4, 2020
b398592
Move creation of forward model matrix
Sara04 Jun 8, 2020
873fb4e
Remove questions; fix typos
Sara04 Jun 9, 2020
4a0d277
Merge branch 'master' of github.com:AthenaEPI/dmipy into amico
matteofrigo Jun 26, 2020
02ad74e
setup AmicoCvxpyOptimizer in MultiCompartmentAMICOModel
matteofrigo Aug 18, 2020
85994d9
fix regularization parameter bug in AMICO framework
matteofrigo Aug 18, 2020
55b76fe
fix set_X_parameter in MultiCompartmentAMICOModel
matteofrigo Aug 19, 2020
9958209
fix parameter indices in FittedMultiCompartmentAMICOModel
matteofrigo Aug 19, 2020
626444f
refactor distribution variable in AmicoCvxpyOptimizer
matteofrigo Aug 19, 2020
d1b7100
Fix fitted parameters conversion from array to dictionary
Sara04 Aug 20, 2020
4e1a38d
remove forward model matrix from FittedMultiCompartmentAMICOModel
matteofrigo Aug 20, 2020
08d74e1
add directions to input of forward_model_matrix in AMICO models
matteofrigo Aug 21, 2020
735b2a1
Check if non-directional fixed parameters are unique for all voxels; …
Sara04 Aug 21, 2020
99168c0
normalize dictionary in AmicoCvxpyOptimizer
matteofrigo Aug 25, 2020
fe3f35c
fix unexpected behaviour of set_fixed_parameter of AMICO models
matteofrigo Aug 25, 2020
6d65658
change dictionary normalization of AmicoCvxpyOptimizer from l1 to l2
matteofrigo Aug 25, 2020
51aa0ab
Check if partial volume parameters are set, check if there are parame…
Sara04 Aug 27, 2020
692bb15
Add scaling of parameters
Sara04 Aug 27, 2020
3cee2c8
Add possibility to estimate circular parameters (as in Bingham distri…
Sara04 Aug 27, 2020
307958c
Fix counting of total number of atoms; increase max number of atoms
Sara04 Aug 27, 2020
0e1f5bf
Add tests for forward model matrix for ball and stick model and NODDI…
Sara04 Aug 27, 2020
70d56cf
fix initial condition error test amico
matteofrigo Sep 8, 2020
e7a506b
FIX: forbid setting tortuosity from MultiCompartmentAMICOModel
matteofrigo Oct 15, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Loading