Skip to content

ArtPoon/flu_frequencies

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

54 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Estimating flu clade and mutation frequencies

Development

Setup

Install Nextstrain conda environment

Run flu analysis:

snakemake --profile profiles/flu

TODO

  • Provide mamba environment file for simpler setup
  • Agree on formatters to use (snakefmt and black?)

Releases

No releases published

Packages

No packages published

Languages

  • Python 77.7%
  • TeX 11.4%
  • Jupyter Notebook 10.9%