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metadynamics

Contains data used to generate the tables and figures in the manuscript: "GPU-Enhanced DFTB Metadynamics for Efficiently Predicting Free Energies of Biochemical Systems".

adp_files:

contains the scripts and data used to generate fig.1, fig.2, and fig.3 in the manuscript. Also contains the geometry files for alanine dipeptide.

remdesivir_files:

contains the scripts and data used to generate fig4, fig.5 and fig.6 in the manuscript. Also contains GPU-dftb and plumed input files used in performing metadynamics caculations.

dockerfile:

script used to create the gpu-dftb-plumed image using HPC container maker (refer: https://github.com/NVIDIA/hpc-container-maker).

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