Complete refactor logger and fix all packages type issues

[alimd]

Description

Complete refactor the logger with new API and fix show correct line number.
Fixes #73
Fixes #74
Fixes #75

PR Checklist

Please check if your PR fulfills the following requirements:

• Open an issue for bug report or feature request and mention it to this PR.
• The commit message follows our guidelines: https://github.com/AliMD/vatr/blob/main/CONTRIBUTING.md#commit-message-format
• All methods have proper description in jsdocs format with @example section.
• Docs have been added / updated (for bug fixes / features).
• I have performed a self-review of my own code.

Other information

[alimd]

[github-actions]

Pull Request closed and locked due to lack of activity.
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