phenoripper

What

PhenoRipper, an easy to use, image analysis software package that enables rapid exploration and interpretation of microscopy data

Why

1. Fast: Start exploring your data in minutes
2. Scalable: Works well even on larger data sets
3. Easy-to-use: Minimal user input
4. Segmentation-free: No need to identify individual cells

How

Running from Source

You will need MATLAB installed with the Bioinformatics, Image Processing and Statistics toolboxes.

0. Start MATLAB.
1. Go to the phenoripper directory
2. Run 'phenoripper'

Running from Binary

Binaries for windows are available from the PhenoRipper website

Note: The installer will install the Matlab MCR in addition to the PhenoRipper software

Test Data Set

A test image data set is available here and corresponding metadata here

Contributing

Please report any bugs or suggestions to [email protected]