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11 Open 0 Closed
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Issues list

When adding a constraint that fails, remove it from constraint records.
#15 opened Nov 1, 2024 by UCDNJJ
1
Modify module names to follow scanpy via init.py. sciduck.qc, sciduck.metrics, sciduck.anno, sciduck.pl.
#11 opened Sep 25, 2024 by UCDNJJ
Templates for constraints.
#10 opened Sep 25, 2024 by UCDNJJ
Recording in anndata.uns cell_sets (list of cell ids) filtered for each metric - threshold pair.
#8 opened Sep 24, 2024 by UCDNJJ
Recording in anndata.uns the quality control metrics and thresholds used.
#7 opened Sep 24, 2024 by UCDNJJ
Basic schema for how we will store quality control logic in uns.
#6 opened Sep 24, 2024 by UCDNJJ
@UCDNJJ
Finalize annotation table python functions.
#5 opened Sep 24, 2024 by UCDNJJ
Finalize cluster centric QC.
#4 opened Sep 24, 2024 by UCDNJJ
Finalize foundation for basic QC.
#3 opened Sep 24, 2024 by UCDNJJ
@mtvector
!ROADMAP!
#2 opened Sep 24, 2024 by UCDNJJ
9 tasks
Visualization of quality metrics to show prior to filtering. enhancement New feature or request
#1 opened Sep 24, 2024 by UCDNJJ
2 tasks
@dyuan1111
1
ProTip! no:milestone will show everything without a milestone.