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Install correctly

Install correctly #2

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint/formatting - possibly with a variety of Python versions - bump version, re-commit publish to PYPI
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: Publish Python package
on:
push:
branches: [ "main" ]
paths: # pushing any files/folders marked ! will not trigger the workflow
- '**'
- '!**.ipynb'
- '!**.json'
- '!.vscode'
- '!scripts/**'
- '!tests/**'
- '!notebooks/**'
- '!**.md'
- '!**.yml'
- '.github/workflows/publish.yml'
workflow_dispatch: # adds a 'Run Workflow' button for manual launching
concurrency: # jobs currently running will be cancelled when this workflow starts
group: ${{ github.ref }}
cancel-in-progress: ${{ github.ref != 'refs/heads/master' }}
jobs:
test:
runs-on: ubuntu-latest
strategy:
fail-fast: true
matrix:
python-version: ["3.9", "3.11"]
os: [ubuntu-latest, macOS-latest, windows-latest]
permissions: write-all
steps:
- uses: actions/checkout@v4
env:
GITHUB_TOKEN: ${{ secrets.PAT }}
# use PAT, or push comes from `github-actions` bot, which can't trigger
# other workflows
- uses: pdm-project/setup-pdm@v4
with:
python-version: ${{ matrix.python-version }}
update-python: true
cache: true # speeds-up setup by caching downloaded packages
- name: Install dependencies
run: |
pdm install -G dev
- name: Test, format, lint
env:
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
DBHUB_API_KEY: ${{ secrets.DBHUB_API_KEY }}
CODE_OCEAN_API_TOKEN: ${{ secrets.CODE_OCEAN_API_TOKEN }}
CODE_OCEAN_DOMAIN: ${{ secrets.CODE_OCEAN_DOMAIN }}
run: |
mkdir .mypy_cache
pdm run test
publish:
needs: test
runs-on: ubuntu-latest
permissions: write-all
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0 # get all commits (on default branch)
fetch-tags: true
- uses: pdm-project/setup-pdm@v4
with:
python-version: '3.11'
cache: true # speeds-up setup by caching downloaded packages
- name: Publish with bump & tag
# actions/checkout
run: |
pdm install -G dev
git config --global user.email "${{ github.actor }}@users.noreply.github.com"
git config --global user.name "${{ github.actor }}"
pdm publish
git push
git push --tags
env:
GITHUB_TOKEN: ${{ secrets.PAT }}
# use PAT, or push comes from `github-actions` bot, which can't trigger
# other workflows
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}