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fixes issue with loading trials from BehaviorEcephysSession.from_nwb #2701

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merged 1 commit into from
Jul 19, 2023
Merged

fixes issue with loading trials from BehaviorEcephysSession.from_nwb #2701

merged 1 commit into from
Jul 19, 2023

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aamster
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@aamster aamster commented Jul 19, 2023 •
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Fixes #2490

This issue was thought to be fixed. However there was a regression that wasn't tested. We only tested for the from_json API.

Testing

Added unit test and manually tested with

from pynwb import NWBHDF5IO
from allensdk.brain_observatory.ecephys.behavior_ecephys_session import (
BehaviorEcephysSession)

path=r"/allen/programs/mindscope/workgroups/np-behavior/vbn_data_release/vbn_s3_cache/visual-behavior-neuropixels-0.4.0/behavior_ecephys_sessions/1044594870/ecephys_session_1044594870.nwb"

with NWBHDF5IO(path, 'r', load_namespaces=True) as nwb_io:
    session = BehaviorEcephysSession.from_nwb(nwbfile=nwb_io.read())

session.get_rolling_performance_df()

@aamster aamster requested a review from morriscb July 19, 2023 14:52
morriscb
morriscb approved these changes Jul 19, 2023
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lgtm

@aamster aamster merged commit 56d1423 into master Jul 19, 2023
11 of 12 checks passed
@aamster aamster deleted the ticket-2490_2 branch July 19, 2023 17:56
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@morriscb morriscb morriscb approved these changes

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Successfully merging this pull request may close these issues.

'change_time_no_display_delay' key in trial table breaks session.get_rolling_performance_df() method
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@aamster @morriscb