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Updating lock files and requirements (#300)
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Co-authored-by: benjijamorris <[email protected]>
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github-actions[bot] and benjijamorris authored Oct 19, 2023
1 parent 7e7e8ae commit 06925ad
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Showing 24 changed files with 504 additions and 1,393 deletions.
65 changes: 24 additions & 41 deletions requirements/linux/all-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -17,19 +17,17 @@ astropy==5.2.2
async-timeout==4.0.3
attrs==23.1.0
autograd==1.6.2
autopage==0.5.1
bfio==2.3.1
autopage==0.5.2
bfio==2.3.2
blinker==1.6.3
boto3==1.24.4
botocore==1.27.59
cellpose-omni==0.9.1
certifi==2023.7.22
charset-normalizer==3.3.0
click==8.1.7
cliff==4.3.0
cloudpickle==2.2.1
cmaes==0.10.0
cmake==3.27.6
cmd2==2.4.3
colorama==0.4.6
colorlog==6.7.0
Expand All @@ -47,7 +45,6 @@ elementpath==4.1.5
entrypoints==0.4
escnn==1.0.11
fasteners==0.19
fastremap==1.14.0
filelock==3.12.4
fire==0.5.0
Flask==2.3.3
Expand All @@ -57,7 +54,7 @@ fsspec==2023.3.0
future==0.18.3
geomloss==0.2.6
gitdb==4.0.10
gitpython==3.1.37
gitpython==3.1.40
gorilla==0.4.0
greenlet==3.0.0
gunicorn==21.2.0
Expand All @@ -68,7 +65,6 @@ hydra-colorlog==1.2.0
hydra-core==1.3.2
hydra-optuna-sweeper==1.2.0
idna==3.4
igraph==0.11.2
imagecodecs==2023.3.16
imageio==2.31.5
importlib-metadata==6.8.0
Expand All @@ -83,48 +79,41 @@ lazy-loader==0.3
lie-learn @ git+https://github.com/colobas/lie_learn.git@d5be2ab
lightning==2.1.0
lightning-utilities==0.9.0
lit==17.0.2
llvmlite==0.41.0
locket==1.0.0
lxml==4.9.3
mahotas==1.4.13
Mako==1.2.4
markdown==3.5
markdown-it-py==3.0.0
MarkupSafe==2.1.3
matplotlib==3.7.3
mdurl==0.1.2
mgen==1.2.1
mlflow==2.7.1
monai-weekly==1.3.dev2341
monai-weekly==1.4.dev2342
mpmath==1.3.0
msgpack==1.0.7
multidict==6.0.4
natsort==8.4.0
ncolor==1.2.1
networkx==3.1
nibabel==5.1.0
Ninja==1.11.1.1
numba==0.58.0
numcodecs==0.12.0
numcodecs==0.12.1
numpy==1.24.4
nvidia-cublas-cu11==11.10.3.66
nvidia-cuda-cupti-cu11==11.7.101
nvidia-cuda-nvrtc-cu11==11.7.99
nvidia-cuda-runtime-cu11==11.7.99
nvidia-cudnn-cu11==8.5.0.96
nvidia-cufft-cu11==10.9.0.58
nvidia-curand-cu11==10.2.10.91
nvidia-cusolver-cu11==11.4.0.1
nvidia-cusparse-cu11==11.7.4.91
nvidia-nccl-cu11==2.14.3
nvidia-nvtx-cu11==11.7.91
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.18.1
nvidia-nvjitlink-cu12==12.3.52
nvidia-nvtx-cu12==12.1.105
oauthlib==3.2.2
ome-types==0.4.2
ome-zarr==0.8.2
omegaconf==2.3.0
omnipose @ git+https://github.com/kevinjohncutler/omnipose.git@ce2e9aa
opencv-python-headless==4.8.1.78
opt-einsum==3.3.0
opt-einsum-fx==0.1.4
optuna==2.10.1
Expand All @@ -133,14 +122,13 @@ packaging==23.2
pandas==1.5.3
partd==1.4.1
pbr==5.11.1
peakdetect==1.2
pillow==10.0.1
pillow==10.1.0
platformdirs==3.11.0
point-cloud-utils==0.30.0
pooch==1.7.0
PrettyTable==3.9.0
protobuf==3.20.1
psutil==5.9.5
psutil==5.9.6
py3nj==0.1.2
pyarrow==10.0.1
pydantic==2.4.2
Expand All @@ -155,7 +143,6 @@ pyperclip==1.8.2
pyshtools==4.10.3
python-dateutil==2.8.2
pytorch-lightning==2.1.0
pytorch-ranger==0.1.1
pytz==2023.3.post1
PyWavelets==1.4.1
PyYAML==6.0.1
Expand All @@ -170,7 +157,6 @@ scikit-image==0.21.0
scikit-learn==1.3.1
scipy==1.9.3
scyjava==1.9.1
setuptools==68.2.2
shellingham==1.5.3
SimpleITK==2.3.0
six==1.16.0
Expand All @@ -183,26 +169,23 @@ sympy==1.12
tabulate==0.9.0
tblib==2.0.0
termcolor==2.3.0
texttable==1.7.0
threadpoolctl==3.2.0
tifffile==2023.7.10
timm==0.9.7
toolz==0.12.0
torch==2.0.1
torch==2.1.0
torch-geometric==2.4.0
torch-optimizer==0.3.0
torchio==0.19.1
torchmetrics==1.2.0
torchserve==0.9.0
torchvf==0.1.3
torchvision==0.15.2
torchvision==0.16.0
tornado==6.3.3
tqdm==4.66.1
triton==2.0.0
triton==2.1.0
typer==0.9.0
typing-extensions==4.8.0
universal-pathlib==0.1.3
urllib3==1.26.17
universal-pathlib==0.1.4
urllib3==1.26.18
vtk==9.2.6
wcwidth==0.2.8
websocket-client==1.6.4
Expand Down
65 changes: 24 additions & 41 deletions requirements/linux/docs-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -18,21 +18,19 @@ astropy==5.2.2
async-timeout==4.0.3
attrs==23.1.0
autograd==1.6.2
autopage==0.5.1
autopage==0.5.2
babel==2.13.0
beautifulsoup4==4.12.2
bfio==2.3.1
bfio==2.3.2
blinker==1.6.3
boto3==1.24.4
botocore==1.27.59
cellpose-omni==0.9.1
certifi==2023.7.22
charset-normalizer==3.3.0
click==8.1.7
cliff==4.3.0
cloudpickle==2.2.1
cmaes==0.10.0
cmake==3.27.6
cmd2==2.4.3
colorama==0.4.6
colorlog==6.7.0
Expand All @@ -51,7 +49,6 @@ elementpath==4.1.5
entrypoints==0.4
escnn==1.0.11
fasteners==0.19
fastremap==1.14.0
filelock==3.12.4
fire==0.5.0
Flask==2.3.3
Expand All @@ -62,7 +59,7 @@ furo==2023.3.23
future==0.18.3
geomloss==0.2.6
gitdb==4.0.10
gitpython==3.1.37
gitpython==3.1.40
gorilla==0.4.0
greenlet==3.0.0
gunicorn==21.2.0
Expand All @@ -73,7 +70,6 @@ hydra-colorlog==1.2.0
hydra-core==1.3.2
hydra-optuna-sweeper==1.2.0
idna==3.4
igraph==0.11.2
imagecodecs==2023.3.16
imageio==2.31.5
imagesize==1.4.1
Expand All @@ -89,50 +85,43 @@ lazy-loader==0.3
lie-learn @ git+https://github.com/colobas/lie_learn.git@d5be2ab
lightning==2.1.0
lightning-utilities==0.9.0
lit==17.0.2
llvmlite==0.41.0
locket==1.0.0
lxml==4.9.3
m2r2==0.3.3.post2
mahotas==1.4.13
Mako==1.2.4
markdown==3.5
markdown-it-py==3.0.0
MarkupSafe==2.1.3
matplotlib==3.7.3
mdurl==0.1.2
mgen==1.2.1
mistune==0.8.4
mlflow==2.7.1
monai-weekly==1.3.dev2341
monai-weekly==1.4.dev2342
mpmath==1.3.0
msgpack==1.0.7
multidict==6.0.4
natsort==8.4.0
ncolor==1.2.1
networkx==3.1
nibabel==5.1.0
Ninja==1.11.1.1
numba==0.58.0
numcodecs==0.12.0
numcodecs==0.12.1
numpy==1.24.4
nvidia-cublas-cu11==11.10.3.66
nvidia-cuda-cupti-cu11==11.7.101
nvidia-cuda-nvrtc-cu11==11.7.99
nvidia-cuda-runtime-cu11==11.7.99
nvidia-cudnn-cu11==8.5.0.96
nvidia-cufft-cu11==10.9.0.58
nvidia-curand-cu11==10.2.10.91
nvidia-cusolver-cu11==11.4.0.1
nvidia-cusparse-cu11==11.7.4.91
nvidia-nccl-cu11==2.14.3
nvidia-nvtx-cu11==11.7.91
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.18.1
nvidia-nvjitlink-cu12==12.3.52
nvidia-nvtx-cu12==12.1.105
oauthlib==3.2.2
ome-types==0.4.2
ome-zarr==0.8.2
omegaconf==2.3.0
omnipose @ git+https://github.com/kevinjohncutler/omnipose.git@ce2e9aa
opencv-python-headless==4.8.1.78
opt-einsum==3.3.0
opt-einsum-fx==0.1.4
optuna==2.10.1
Expand All @@ -141,14 +130,13 @@ packaging==23.2
pandas==1.5.3
partd==1.4.1
pbr==5.11.1
peakdetect==1.2
pillow==10.0.1
pillow==10.1.0
platformdirs==3.11.0
point-cloud-utils==0.30.0
pooch==1.7.0
PrettyTable==3.9.0
protobuf==3.20.1
psutil==5.9.5
psutil==5.9.6
py3nj==0.1.2
pyarrow==10.0.1
pydantic==2.4.2
Expand All @@ -163,7 +151,6 @@ pyperclip==1.8.2
pyshtools==4.10.3
python-dateutil==2.8.2
pytorch-lightning==2.1.0
pytorch-ranger==0.1.1
pytz==2023.3.post1
PyWavelets==1.4.1
PyYAML==6.0.1
Expand All @@ -178,7 +165,6 @@ scikit-image==0.21.0
scikit-learn==1.3.1
scipy==1.9.3
scyjava==1.9.1
setuptools==68.2.2
shellingham==1.5.3
SimpleITK==2.3.0
six==1.16.0
Expand All @@ -201,26 +187,23 @@ sympy==1.12
tabulate==0.9.0
tblib==2.0.0
termcolor==2.3.0
texttable==1.7.0
threadpoolctl==3.2.0
tifffile==2023.7.10
timm==0.9.7
toolz==0.12.0
torch==2.0.1
torch==2.1.0
torch-geometric==2.4.0
torch-optimizer==0.3.0
torchio==0.19.1
torchmetrics==1.2.0
torchserve==0.9.0
torchvf==0.1.3
torchvision==0.15.2
torchvision==0.16.0
tornado==6.3.3
tqdm==4.66.1
triton==2.0.0
triton==2.1.0
typer==0.9.0
typing-extensions==4.8.0
universal-pathlib==0.1.3
urllib3==1.26.17
universal-pathlib==0.1.4
urllib3==1.26.18
vtk==9.2.6
wcwidth==0.2.8
websocket-client==1.6.4
Expand Down
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