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Decoupling #50

Merged
merged 79 commits into from
Mar 19, 2024
Merged

Decoupling #50

merged 79 commits into from
Mar 19, 2024

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vianamp
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@vianamp vianamp commented Mar 18, 2024

Pull request recommendations:

  • Name your pull request your-development-type/short-description. Ex: feature/read-tiff-files
  • Link to any relevant issue in the PR description. Ex: Resolves [Adjusted the general and cluster module to be more general #12], adds tiff file format support
  • Provide context of changes.
  • Provide relevant tests for your feature or bug fix.
  • Provide or update documentation for any feature added by your pull request.

Thanks for contributing!

vianamp and others added 30 commits August 9, 2022 10:53
@vianamp
Initial commit
fa9cce3
@vianamp
Small fixes for initial commit
b396fab
@vianamp
Corrects manifet location and channel names
03696e7
@vianamp
Func for creating dirs
945041c
@vianamp
Adjust channel names in case raw isnt available
e8c1e81
@vianamp
Adjust load nad save config
4d71719
@vianamp
Decoupled config for compute features step
bbc292b
@vianamp
Config scheme for agg step
142483e
@vianamp
Merge pull request #47 from AllenCell/other_datasets
395b0eb 
Other datasets
@vianamp
Merge branch 'decoupling' of https://github.com/AllenCell/cvapipe_ana…
ec9625c 
…lysis into decoupling
@vianamp
Major fixes for decoupling
39075ad
@vianamp
Fix for load data without raw images
9a1481f
@vianamp
Decoupling next steps
7b2e766
@vianamp
Decoupling next steps
ead53db
@vianamp
Merge branch 'decoupling' of https://github.com/AllenCell/cvapipe_ana…
690f508 
…lysis into decoupling
@vianamp
Add jobs warning
0a20d92
@vianamp
Use jobs warning
39921c4
@vianamp
Shape modes decoupled
71fc64a
@vianamp
Aggregation decoupled
75604d1
@vianamp
Correlation decoupled
74dd4da
@vianamp
Cluster decoupled
cb79fad
@vianamp
Distributed features decoupled
5880284
@vianamp
Exclude bad nodes
b72f186
@vianamp
Decoupling distributed agg and param
c660a3d
@vianamp
Decouple stereotypy
c8b89e2
@vianamp
Decouple distributed correlation
a307405
@vianamp
Allows ploting when there are missing structs
479b280
@vianamp
Keep keys order in yaml
2c0fbde
@vianamp
Fix funcs to overcome missing data
4b0e4c2
@vianamp
Decouple concordance
10fb453
@vianamp vianamp marked this pull request as draft March 18, 2024 15:43
@vianamp vianamp self-assigned this Mar 18, 2024
@vianamp vianamp marked this pull request as ready for review March 19, 2024 21:34
@vianamp vianamp closed this Mar 19, 2024
@vianamp vianamp reopened this Mar 19, 2024
vianamp
vianamp commented Mar 19, 2024
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Accept changes from decoupling

@vianamp vianamp merged commit 107f89d into master Mar 19, 2024
@pgarrison pgarrison mentioned this pull request Mar 28, 2024
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