Replacing dask with srun and concurrent.
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We used this version to compute the current set of features for the whole variance dataset. It takes about 3hrs. |
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Because the combination of Dask and Slurm was very unstable, we replaced the parallel computation done by Dask with
srunandconcurrent. A dataframe is split into multiple chunks and each chunk is ran by a job on slurm. Each job runs multiple process in parallel usingProcessPoolExecutorfromconcurrent.