Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR cleans up SDF generation scripts.
To generate scaled segs, meshes, and SDFs for the NPM1 dataset, run
python image_sdfs.py --save_path "./test_img/" --manifest ""../../../../../morphology_appropriate_representation_learning/preprocessed_data/npm1/manifest.csv" --vox_resolution 32 --debug True --global_path "../../../../../"
To get the max bounding box of the scaled segs, run
python get_max_bounding_box.py --save_path './test_img/' --manifest ""../../../../../morphology_appropriate_representation_learning/preprocessed_data/npm1/manifest.csv" --global_path "../../../../../"
To generate SDF point clouds, run
python pc_sdfs.py --save_path "./test_pcs/" --scaled_mesh_path "./test_img/outputs_mesh/" --vox_resolution 32