add cellprofiler and no finetuning model to drug analysis + box plots #74
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pgarrison
approved these changes
Dec 7, 2024
vianamp
approved these changes
Dec 9, 2024
added 2 commits
December 9, 2024 15:33
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This PR adds the
CellProfilerandRotation_invariant_pointcloud_SDF_no_finetuningmodels to the drug data analysis and switches over to bar plots. Also fixed a bug in running the following commandpython src/br/analysis/run_embeddings.py --save_path "./outputs_npm1_perturb/" --sdf True --dataset "npm1_perturb" --batch_size 2 --debug False