Merge pull request #635 from AlexsLemonade/allyhawkins/sc-advanced-re…

…adme

Update readme for sc advanced folder to contain links to notebooks

scRNA-seq-advanced/README.md

@@ -7,10 +7,15 @@ It covers cell-type identification, integration of multiple single-cell RNA-seq
 
 The notebooks that comprise this module are:
 
-* TBD
-* `03-dataset_integration.Rmd`
+* [Introduction and review of processing scRNA-seq data](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/01-read_filter_normalize_scRNA.nb.html)
+* [Cell type annotation](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/02-celltype_assignment.nb.html)
+* [Integration of multiple scRNA-seq libraries](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/03-dataset_integration.nb.html)
+* [Differential expression analysis](https://alexslemonade.github.io/training-modules/scRNA-seq-advanced/04-differential_expression.nb.html)
 
 
 Additional exercise notebooks:
 
-* TBD
+* [Working with CITE-seq data](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_01-citeseq.Rmd)
+* [Cell type annotation](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_02-celltype.Rmd)
+* [Integration of multiple scRNA-seq libraries](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_03-integration.Rmd)
+* [Differential expression analysis](https://github.com/AlexsLemonade/training-modules/blob/master/scRNA-seq-advanced/exercise_04-diffexp.Rmd)