Dengue Epi-Scanner App

This H2O Wave application analyzes the expansion of dengue and chikungunya in Brazil using up-to-date incidence data from Infodengue.

Getting Started

Run with miniforge environment:

Pre-requisites

• Miniforge installed

# Installing dependencies and activating the conda environment
$ mamba env create -f conda/env-base.yaml
$ conda activate episcanner 
$ poetry install

Populate the data/ directory

python ./epi_scanner/management/cli.py [disease]

# Then in the terminal, start the app
$ wave run --no-reload --no-autostart epi_scanner.app

Running with docker-compose

Pre-requisites

• Docker installed and running
• docker-compose installed
• Miniforge installed

Using docker compose makes it a little easier to build and run the app.

# Build image
$ make docker-build

# Start container
$ make docker-start

# Stop and remove network and all containers
$ make docker-stop

Data Update

The data update is now generated by the epi_scanner-downloader tool.

For more information, please see the epi_scanner-downloader repository.