MultiFab Fixture Cleanup via FabArray::clear (#214)

* MultiFab Fixture Cleanup via `FabArray::clear`

Using a context manager and calling clear ensures that we will
not hold device memory anymore once we hit `AMReX::Finalize`,
even in the situation where an exception is raised in a test.
This avoids segfaults for failing tests.

* `test_mfab_dtoh_copy`: Clear MFabs

Clear out memory safely on runtime errors.

* Update Stub Files

---------

Co-authored-by: ax3l <[email protected]>

src/Base/MultiFab.cpp

@@ -127,6 +127,10 @@ void init_MultiFab(py::module &m)
     ;
 
     py_FabArray_FArrayBox
+        // define
+        .def("clear", &FabArray<FArrayBox>::clear)
+        .def("ok", &FabArray<FArrayBox>::ok)
+
         //.def("array", py::overload_cast< const MFIter& >(&FabArray<FArrayBox>::array))
         //.def("const_array", &FabArray<FArrayBox>::const_array)
         .def("array", [](FabArray<FArrayBox> & fa, MFIter const & mfi)

src/amrex/space1d/amrex_1d_pybind/__init__.pyi

@@ -3755,6 +3755,7 @@ class FabArray_FArrayBox(FabArrayBase):
         arg6: IntVect,
     ) -> None: ...
     def array(self, arg0: MFIter) -> Array4_double: ...
+    def clear(self) -> None: ...
     def const_array(self, arg0: MFIter) -> Array4_double_const: ...
     @typing.overload
     def fill_boundary(self, cross: bool = False) -> None: ...
@@ -3779,6 +3780,7 @@ class FabArray_FArrayBox(FabArrayBase):
         period: Periodicity,
         cross: bool = False,
     ) -> None: ...
+    def ok(self) -> bool: ...
     def override_sync(self, arg0: Periodicity) -> None: ...
     def sum(self, arg0: int, arg1: IntVect, arg2: bool) -> float: ...
     @typing.overload

src/amrex/space2d/amrex_2d_pybind/__init__.pyi

@@ -3755,6 +3755,7 @@ class FabArray_FArrayBox(FabArrayBase):
         arg6: IntVect,
     ) -> None: ...
     def array(self, arg0: MFIter) -> Array4_double: ...
+    def clear(self) -> None: ...
     def const_array(self, arg0: MFIter) -> Array4_double_const: ...
     @typing.overload
     def fill_boundary(self, cross: bool = False) -> None: ...
@@ -3779,6 +3780,7 @@ class FabArray_FArrayBox(FabArrayBase):
         period: Periodicity,
         cross: bool = False,
     ) -> None: ...
+    def ok(self) -> bool: ...
     def override_sync(self, arg0: Periodicity) -> None: ...
     def sum(self, arg0: int, arg1: IntVect, arg2: bool) -> float: ...
     @typing.overload

src/amrex/space3d/amrex_3d_pybind/__init__.pyi

@@ -3755,6 +3755,7 @@ class FabArray_FArrayBox(FabArrayBase):
         arg6: IntVect,
     ) -> None: ...
     def array(self, arg0: MFIter) -> Array4_double: ...
+    def clear(self) -> None: ...
     def const_array(self, arg0: MFIter) -> Array4_double_const: ...
     @typing.overload
     def fill_boundary(self, cross: bool = False) -> None: ...
@@ -3779,6 +3780,7 @@ class FabArray_FArrayBox(FabArrayBase):
         period: Periodicity,
         cross: bool = False,
     ) -> None: ...
+    def ok(self) -> bool: ...
     def override_sync(self, arg0: Periodicity) -> None: ...
     def sum(self, arg0: int, arg1: IntVect, arg2: bool) -> float: ...
     @typing.overload

tests/conftest.py

@@ -85,47 +85,59 @@ def distmap(boxarr):
 
 
 @pytest.fixture(scope="function", params=list(itertools.product([1, 3], [0, 1])))
-def make_mfab(boxarr, distmap, request):
+def mfab(boxarr, distmap, request):
     """MultiFab that is either managed or device:
     The MultiFab object itself is not a fixture because we want to avoid caching
     it between amr.initialize/finalize calls of various tests.
     https://github.com/pytest-dev/pytest/discussions/10387
     https://github.com/pytest-dev/pytest/issues/5642#issuecomment-1279612764
     """
 
-    def create():
-        num_components = request.param[0]
-        num_ghost = request.param[1]
-        mfab = amr.MultiFab(boxarr, distmap, num_components, num_ghost)
-        mfab.set_val(0.0, 0, num_components)
-        return mfab
+    class MfabContextManager:
+        def __enter__(self):
+            num_components = request.param[0]
+            num_ghost = request.param[1]
+            self.mfab = amr.MultiFab(boxarr, distmap, num_components, num_ghost)
+            self.mfab.set_val(0.0, 0, num_components)
+            return self.mfab
 
-    return create
+        def __exit__(self, exc_type, exc_value, traceback):
+            self.mfab.clear()
+            del self.mfab
+
+    with MfabContextManager() as mfab:
+        yield mfab
 
 
 @pytest.mark.skipif(
     amr.Config.gpu_backend != "CUDA", reason="Requires AMReX_GPU_BACKEND=CUDA"
 )
 @pytest.fixture(scope="function", params=list(itertools.product([1, 3], [0, 1])))
-def make_mfab_device(boxarr, distmap, request):
+def mfab_device(boxarr, distmap, request):
     """MultiFab that resides purely on the device:
     The MultiFab object itself is not a fixture because we want to avoid caching
     it between amr.initialize/finalize calls of various tests.
     https://github.com/pytest-dev/pytest/discussions/10387
     https://github.com/pytest-dev/pytest/issues/5642#issuecomment-1279612764
     """
 
-    def create():
-        num_components = request.param[0]
-        num_ghost = request.param[1]
-        mfab = amr.MultiFab(
-            boxarr,
-            distmap,
-            num_components,
-            num_ghost,
-            amr.MFInfo().set_arena(amr.The_Device_Arena()),
-        )
-        mfab.set_val(0.0, 0, num_components)
-        return mfab
-
-    return create
+    class MfabDeviceContextManager:
+        def __enter__(self):
+            num_components = request.param[0]
+            num_ghost = request.param[1]
+            self.mfab = amr.MultiFab(
+                boxarr,
+                distmap,
+                num_components,
+                num_ghost,
+                amr.MFInfo().set_arena(amr.The_Device_Arena()),
+            )
+            self.mfab.set_val(0.0, 0, num_components)
+            return self.mfab
+
+        def __exit__(self, exc_type, exc_value, traceback):
+            self.mfab.clear()
+            del self.mfab
+
+    with MfabDeviceContextManager() as mfab:
+        yield mfab

tests/test_multifab.py

@@ -8,8 +8,7 @@
 import amrex.space3d as amr
 
 
-def test_mfab_loop(make_mfab):
-    mfab = make_mfab()
+def test_mfab_loop(mfab):
     ngv = mfab.nGrowVect
     print(f"\n  mfab={mfab}, mfab.nGrowVect={ngv}")
 
@@ -78,8 +77,7 @@ def test_mfab_loop(make_mfab):
         #   TODO
 
 
-def test_mfab_simple(make_mfab):
-    mfab = make_mfab()
+def test_mfab_simple(mfab):
     assert mfab.is_all_cell_centered
     # assert(all(not mfab.is_nodal(i) for i in [-1, 0, 1, 2]))  # -1??
     assert all(not mfab.is_nodal(i) for i in [0, 1, 2])
@@ -144,8 +142,7 @@ def test_mfab_ops(boxarr, distmap, nghost):
     np.testing.assert_allclose(dst.max(0), 150.0)
 
 
-def test_mfab_mfiter(make_mfab):
-    mfab = make_mfab()
+def test_mfab_mfiter(mfab):
     assert iter(mfab).is_valid
     assert iter(mfab).length == 8
 
@@ -159,8 +156,7 @@ def test_mfab_mfiter(make_mfab):
 @pytest.mark.skipif(
     amr.Config.gpu_backend != "CUDA", reason="Requires AMReX_GPU_BACKEND=CUDA"
 )
-def test_mfab_ops_cuda_numba(make_mfab_device):
-    mfab_device = make_mfab_device()
+def test_mfab_ops_cuda_numba(mfab_device):
     # https://numba.pydata.org/numba-doc/dev/cuda/cuda_array_interface.html
     from numba import cuda
 
@@ -195,8 +191,7 @@ def set_to_three(array):
 @pytest.mark.skipif(
     amr.Config.gpu_backend != "CUDA", reason="Requires AMReX_GPU_BACKEND=CUDA"
 )
-def test_mfab_ops_cuda_cupy(make_mfab_device):
-    mfab_device = make_mfab_device()
+def test_mfab_ops_cuda_cupy(mfab_device):
     # https://docs.cupy.dev/en/stable/user_guide/interoperability.html
     import cupy as cp
     import cupyx.profiler
@@ -285,8 +280,7 @@ def set_to_seven(x):
 @pytest.mark.skipif(
     amr.Config.gpu_backend != "CUDA", reason="Requires AMReX_GPU_BACKEND=CUDA"
 )
-def test_mfab_ops_cuda_pytorch(make_mfab_device):
-    mfab_device = make_mfab_device()
+def test_mfab_ops_cuda_pytorch(mfab_device):
     # https://docs.cupy.dev/en/stable/user_guide/interoperability.html#pytorch
     import torch
 
@@ -305,8 +299,8 @@ def test_mfab_ops_cuda_pytorch(make_mfab_device):
 @pytest.mark.skipif(
     amr.Config.gpu_backend != "CUDA", reason="Requires AMReX_GPU_BACKEND=CUDA"
 )
-def test_mfab_ops_cuda_cuml(make_mfab_device):
-    mfab_device = make_mfab_device()  # noqa
+def test_mfab_ops_cuda_cuml(mfab_device):
+    pass
     # https://github.com/rapidsai/cuml
     # https://github.com/rapidsai/cudf
     #   maybe better for particles as a dataframe test
@@ -322,47 +316,55 @@ def test_mfab_ops_cuda_cuml(make_mfab_device):
 @pytest.mark.skipif(
     amr.Config.gpu_backend != "CUDA", reason="Requires AMReX_GPU_BACKEND=CUDA"
 )
-def test_mfab_dtoh_copy(make_mfab_device):
-    mfab_device = make_mfab_device()
-
-    mfab_host = amr.MultiFab(
-        mfab_device.box_array(),
-        mfab_device.dm(),
-        mfab_device.n_comp(),
-        mfab_device.n_grow_vect(),
-        amr.MFInfo().set_arena(amr.The_Pinned_Arena()),
-    )
-    mfab_host.set_val(42.0)
-
-    amr.dtoh_memcpy(mfab_host, mfab_device)
-
-    # assert all are 0.0 on host
-    host_min = mfab_host.min(0)
-    host_max = mfab_host.max(0)
-    assert host_min == host_max
-    assert host_max == 0.0
-
-    dev_val = 11.0
-    mfab_host.set_val(dev_val)
-    amr.dtoh_memcpy(mfab_device, mfab_host)
-
-    # assert all are 11.0 on device
-    for n in range(mfab_device.n_comp()):
-        assert mfab_device.min(comp=n) == dev_val
-        assert mfab_device.max(comp=n) == dev_val
-
-    # numpy bindings (w/ copy)
-    local_boxes_host = mfab_device.to_numpy(copy=True)
-    assert max([np.max(box) for box in local_boxes_host]) == dev_val
-
-    # numpy bindings (w/ copy)
-    for mfi in mfab_device:
-        marr = mfab_device.array(mfi).to_numpy(copy=True)
-        assert np.min(marr) >= dev_val
-        assert np.max(marr) <= dev_val
+def test_mfab_dtoh_copy(mfab_device):
+    class MfabPinnedContextManager:
+        def __enter__(self):
+            self.mfab = amr.MultiFab(
+                mfab_device.box_array(),
+                mfab_device.dm(),
+                mfab_device.n_comp(),
+                mfab_device.n_grow_vect(),
+                amr.MFInfo().set_arena(amr.The_Pinned_Arena()),
+            )
+            return self.mfab
+
+        def __exit__(self, exc_type, exc_value, traceback):
+            self.mfab.clear()
+            del self.mfab
+
+    with MfabPinnedContextManager() as mfab_host:
+        mfab_host.set_val(42.0)
+
+        amr.dtoh_memcpy(mfab_host, mfab_device)
+
+        # assert all are 0.0 on host
+        host_min = mfab_host.min(0)
+        host_max = mfab_host.max(0)
+        assert host_min == host_max
+        assert host_max == 0.0
+
+        dev_val = 11.0
+        mfab_host.set_val(dev_val)
+        amr.htod_memcpy(mfab_device, mfab_host)
+
+        # assert all are 11.0 on device
+        for n in range(mfab_device.n_comp()):
+            assert mfab_device.min(comp=n) == dev_val
+            assert mfab_device.max(comp=n) == dev_val
+
+        # numpy bindings (w/ copy)
+        local_boxes_host = mfab_device.to_numpy(copy=True)
+        assert max([np.max(box) for box in local_boxes_host]) == dev_val
+        del local_boxes_host
+
+        # numpy bindings (w/ copy)
+        for mfi in mfab_device:
+            marr = mfab_device.array(mfi).to_numpy(copy=True)
+            assert np.min(marr) >= dev_val
+            assert np.max(marr) <= dev_val
 
-    # cupy bindings (w/o copy)
-    import cupy as cp
+        # cupy bindings (w/o copy)
+        import cupy as cp
 
-    local_boxes_device = mfab_device.to_cupy()
-    assert max([cp.max(box) for box in local_boxes_device]) == dev_val
+        local_boxes_device = mfab_device.to_cupy()
+        assert max([cp.max(box) for box in local_boxes_device]) == dev_val