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More flexible state reinitialization / PEtab import reinitialization fixes #1417

Merged
merged 25 commits into from
Feb 18, 2021
Merged

More flexible state reinitialization / PEtab import reinitialization fixes #1417

merged 25 commits into from
Feb 18, 2021

Commits on Feb 12, 2021

  1. C++: Allow specifying state indices for reinitialization and pass to … 

    …(s)x0_fixedParameters
    @dweindl
    dweindl committed Feb 12, 2021
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  2. Update templates

    @dweindl
    dweindl committed Feb 12, 2021
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  3. Use updated PEtab test suite

    @dweindl
    dweindl committed Feb 12, 2021
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  4. Reinitialize only selected states

    @dweindl
    dweindl committed Feb 12, 2021
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  5. doc

    @dweindl
    dweindl committed Feb 12, 2021
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  6. fixup

    @dweindl
    dweindl committed Feb 12, 2021
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  7. ..

    @dweindl
    dweindl committed Feb 12, 2021
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  8. fixup ode_export

    @dweindl
    dweindl committed Feb 12, 2021
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  9. Add debug output

    @dweindl
    dweindl committed Feb 12, 2021
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  10. naturalvar

    @dweindl
    dweindl committed Feb 12, 2021
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  11. PEtab: reinitialize only required states

    @dweindl
    dweindl committed Feb 12, 2021
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  12. Skip reinitialization on NaN in condition table

    @dweindl
    dweindl committed Feb 12, 2021
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Commits on Feb 13, 2021

  1. Add convenience functions; populate reinitialization idxs based on fl… 

    …ags for bwd-compat
    @dweindl
    dweindl committed Feb 13, 2021
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  2. nx_rdata

    @dweindl
    dweindl committed Feb 13, 2021
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Commits on Feb 16, 2021

  1. getReinitializeFixedParameterInitialStates

    @dweindl
    dweindl committed Feb 16, 2021
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  2. cleanup

    @dweindl
    dweindl committed Feb 16, 2021
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  3. fixup

    @dweindl
    dweindl committed Feb 16, 2021
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  4. ..

    @dweindl
    dweindl committed Feb 16, 2021
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  5. Only _x0_fixedParameters_idxs

    @dweindl
    dweindl committed Feb 16, 2021
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  6. No sensi

    @dweindl
    dweindl committed Feb 16, 2021
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Commits on Feb 17, 2021

  1. Reenable sensitivities for 0017 after test case update

    @dweindl
    dweindl committed Feb 17, 2021
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  2. Merge branch 'develop' into petab_reinit

    @dweindl
    dweindl authored Feb 17, 2021
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  3. fix name

    @dweindl
    dweindl committed Feb 17, 2021
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  4. fix names

    @dweindl
    dweindl committed Feb 17, 2021
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Commits on Feb 18, 2021

  1. Merge branch 'develop' into petab_reinit

    @dweindl
    dweindl authored Feb 18, 2021
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