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Update README.org
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alexrd authored Mar 8, 2018
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Expand Up @@ -25,14 +25,15 @@ To install CSNAnalysis, clone one of the releases and manually install it.
- networkx

* Features
CSNAnalysis will have the following capabilities:
CSNAnalysis has the following capabilities:

- constructing transition probability matrices
- trimming CSNs using a variety of criteria
- computing committor probabilities with an arbitrary number of basins
- computing hub-scores (mediation probabilities) with an arbitrary number of basins
- export CSV files for node and edge files in Gephi format
- compute undirected edge weights appropriate for graph visualization in Gephi
- export gexf files with custom node colorings

* Tutorial
See the Jupyter Notebook in examples/examples.ipynb

* Misc
** Versioning
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