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func test update
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refine inputs had star alleles
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@ACEnglish
ACEnglish committed Aug 2, 2024
1 parent 3150ee6 commit b5b78b1
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Showing 6 changed files with 53 additions and 63 deletions.
34 changes: 17 additions & 17 deletions repo_utils/answer_key/refine/refine_output_one/refine.regions.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ chr20 709729 709975 2 2 0 0 False 2 2 0 0 TP
chr20 1149807 1150220 2 2 0 0 False 2 2 0 0 TP
chr20 1257933 1260528 2 2 0 0 False 2 2 0 0 TP
chr20 1301599 1302667 2 2 0 0 False 2 2 0 0 TP
chr20 2240925 2241726 1 1 5 1 True 5 5 0 0 TP
chr20 2240925 2241726 1 1 4 1 True 5 5 0 0 TP
chr20 2442966 2443943 2 2 0 0 False 2 2 0 0 TP
chr20 2842574 2842997 2 2 0 0 False 2 2 0 0 TP
chr20 4032219 4033601 2 2 2 1 True 4 4 0 0 TP
Expand All @@ -19,7 +19,7 @@ chr20 5554104 5554185 0 0 0 0 False 0 0 0 0 TN
chr20 5962327 5962410 0 0 0 0 False 0 0 0 0 TN
chr20 7435215 7435749 2 2 0 0 False 2 2 0 0 TP
chr20 7719330 7719414 1 1 0 0 False 1 1 0 0 TP
chr20 7720911 7721003 1 1 1 0 True 1 1 0 0 TP
chr20 7720911 7721003 1 1 0 0 False 1 1 0 0 TP
chr20 7721059 7721319 0 0 0 0 False 0 0 0 0 TN
chr20 8661911 8662657 1 1 3 1 True 9 9 0 0 TP
chr20 9015548 9016039 1 1 0 0 False 1 1 0 0 TP
Expand All @@ -33,7 +33,7 @@ chr20 16226954 16228487 3 3 0 0 False 3 3 0 0 TP
chr20 16257741 16259345 2 2 2 0 True 4 4 1 0 FN
chr20 16395149 16395421 3 3 1 0 True 3 3 0 0 TP
chr20 16894360 16894435 1 1 0 0 False 1 1 0 0 TP
chr20 17081216 17081410 2 2 1 0 True 2 2 0 0 TP
chr20 17081216 17081410 2 2 0 0 False 2 2 0 0 TP
chr20 17197123 17197241 2 2 0 0 False 2 2 0 0 TP
chr20 17303131 17303609 1 1 0 0 False 1 1 0 0 TP
chr20 18209097 18210727 3 3 2 1 True 5 5 0 0 TP
Expand All @@ -43,9 +43,9 @@ chr20 19663366 19663526 2 2 0 0 False 2 2 0 0 TP
chr20 20295955 20296565 2 2 2 1 True 3 3 0 0 TP
chr20 20320285 20320579 1 1 2 1 True 1 1 0 0 TP
chr20 20337200 20337707 1 1 6 2 True 3 3 0 0 TP
chr20 20354570 20358323 7 7 9 1 True 16 16 0 0 TP
chr20 20354570 20358323 7 7 8 1 True 16 16 0 0 TP
chr20 20458640 20458937 2 2 0 0 False 2 2 0 0 TP
chr20 21120212 21120539 2 2 1 0 True 1 1 0 0 TP
chr20 21120212 21120539 2 2 0 0 False 2 2 0 0 TP
chr20 21721174 21721735 2 2 1 0 True 3 3 0 0 TP
chr20 22081961 22084122 4 4 3 1 True 9 9 0 0 TP
chr20 22471831 22472129 2 2 0 0 False 2 2 0 0 TP
Expand All @@ -54,7 +54,7 @@ chr20 23155504 23155975 3 3 2 2 True 5 5 0 0 TP
chr20 23267965 23268087 2 2 0 0 False 2 2 0 0 TP
chr20 23560883 23561191 1 1 2 2 True 3 3 0 0 TP
chr20 23942431 23942955 1 1 0 0 False 1 1 0 0 TP
chr20 24407983 24408997 3 3 1 0 True 2 2 0 0 TP
chr20 24407983 24408997 3 3 0 0 False 3 3 0 0 TP
chr20 24681988 24682277 2 2 1 0 True 2 2 0 0 TP
chr20 24836081 24836384 2 2 0 0 False 2 2 0 0 TP
chr20 24956961 24957198 2 2 0 0 False 2 2 0 0 TP
Expand All @@ -71,10 +71,10 @@ chr20 32723469 32724637 0 0 0 0 False 0 0 0 0 TN
chr20 32724927 32724999 0 0 0 0 False 0 0 0 0 TN
chr20 34205619 34205960 1 1 0 0 False 1 1 0 0 TP
chr20 34235750 34236213 0 0 2 1 True 2 2 0 0 TP
chr20 35539120 35539724 4 4 1 0 True 4 4 0 0 TP
chr20 35539120 35539724 4 4 0 0 False 4 4 0 0 TP
chr20 35580013 35580886 1 1 2 1 True 7 7 0 0 TP
chr20 36642142 36642222 1 1 0 0 False 1 1 0 0 TP
chr20 37361752 37362058 2 2 1 0 True 2 2 0 0 TP
chr20 37361752 37362058 2 2 0 0 False 2 2 0 0 TP
chr20 38123590 38124705 2 2 1 4 True 7 7 0 0 TP
chr20 38194533 38194666 2 2 0 0 False 2 2 0 0 TP
chr20 38313618 38315069 3 3 0 0 False 3 3 0 0 TP
Expand Down Expand Up @@ -113,13 +113,13 @@ chr20 53913028 53913352 2 2 0 0 False 2 2 0 0 TP
chr20 54690771 54690873 2 2 0 0 False 2 2 0 0 TP
chr20 55532159 55533378 1 1 0 0 False 1 1 0 0 TP
chr20 55624482 55625807 6 6 6 0 True 11 11 0 0 TP
chr20 55627344 55628450 7 7 4 0 True 8 8 0 0 TP
chr20 55627344 55628450 7 7 3 0 True 8 8 0 0 TP
chr20 55943919 55945807 2 2 2 1 True 5 5 0 0 TP
chr20 56280422 56282114 4 4 5 1 True 10 10 0 0 TP
chr20 56284258 56284407 2 2 0 0 False 2 2 0 0 TP
chr20 56710555 56711193 2 2 0 0 False 2 2 0 0 TP
chr20 57090672 57091411 1 1 2 0 True 4 4 0 0 TP
chr20 57110212 57110785 2 2 1 0 True 2 2 0 0 TP
chr20 57110212 57110785 2 2 0 0 False 2 2 0 0 TP
chr20 57189946 57190540 0 0 3 1 True 1 1 0 0 TP
chr20 57350808 57350987 1 1 1 0 True 3 3 0 0 TP
chr20 57417271 57418234 2 2 0 0 False 2 2 0 0 TP
Expand All @@ -143,7 +143,7 @@ chr20 61176725 61176974 2 2 0 0 False 2 2 0 0 TP
chr20 61201683 61202474 2 2 4 1 True 7 7 0 0 TP
chr20 61229587 61229717 2 2 0 0 False 2 2 0 0 TP
chr20 61282506 61283669 4 4 2 0 True 6 6 0 0 TP
chr20 61289625 61290555 1 1 2 1 True 2 2 0 0 TP
chr20 61289625 61290555 1 1 1 1 True 2 2 0 0 TP
chr20 61329258 61329577 0 0 0 2 False 0 0 0 2 FP
chr20 61331528 61331753 2 2 0 0 False 2 2 0 0 TP
chr20 61337205 61337590 2 2 0 0 False 2 2 0 0 TP
Expand All @@ -152,16 +152,16 @@ chr20 61475406 61475726 2 2 0 0 False 2 2 0 0 TP
chr20 61561920 61562503 0 0 2 1 True 2 2 0 0 TP
chr20 61653427 61654067 1 1 0 0 False 1 1 0 0 TP
chr20 61723833 61724244 1 1 0 0 False 1 1 0 0 TP
chr20 61744188 61744654 2 2 1 0 True 2 2 0 0 TP
chr20 61783403 61784839 3 3 1 0 True 4 4 0 0 TP
chr20 61744188 61744654 2 2 0 0 False 2 2 0 0 TP
chr20 61783403 61784839 3 3 0 0 False 3 3 0 0 TP
chr20 61919676 61921374 2 2 0 0 False 2 2 0 0 TP
chr20 62057573 62059139 1 1 3 1 True 7 7 0 0 TP
chr20 62212844 62213874 4 4 0 0 False 4 4 0 0 TP
chr20 62270279 62271094 1 1 3 1 True 4 4 0 0 TP
chr20 62317837 62318459 2 2 0 0 False 2 2 0 0 TP
chr20 62321031 62321873 2 2 3 0 True 5 5 0 0 TP
chr20 62349612 62349932 1 1 5 1 True 6 6 0 0 TP
chr20 62360190 62360712 0 0 8 2 True 5 5 0 0 TP
chr20 62360190 62360712 0 0 7 2 True 5 5 0 0 TP
chr20 62417424 62418062 3 3 0 0 False 3 3 0 0 TP
chr20 62422444 62422791 2 2 0 0 False 2 2 0 0 TP
chr20 62504279 62504614 2 2 0 0 False 2 2 0 0 TP
Expand Down Expand Up @@ -190,7 +190,7 @@ chr20 63294079 63294266 2 2 0 0 False 2 2 0 0 TP
chr20 63303655 63304858 2 2 0 0 False 2 2 0 0 TP
chr20 63334892 63335504 2 2 0 0 False 2 2 0 0 TP
chr20 63361274 63361471 2 2 0 0 False 2 2 0 0 TP
chr20 63372065 63372691 2 2 1 0 True 2 2 0 0 TP
chr20 63372065 63372691 2 2 0 0 False 2 2 0 0 TP
chr20 63392592 63392812 1 1 0 0 False 1 1 0 0 TP
chr20 63401702 63402319 1 1 0 0 False 1 1 0 0 TP
chr20 63450491 63450613 2 2 0 0 False 2 2 0 0 TP
Expand All @@ -199,7 +199,7 @@ chr20 63491589 63493064 1 1 3 1 True 4 4 0 0 TP
chr20 63535674 63536245 1 1 2 0 True 1 1 0 0 TP
chr20 63546436 63546842 1 1 0 0 False 1 1 0 0 TP
chr20 63553294 63553757 1 1 0 0 False 1 1 0 0 TP
chr20 63559288 63559963 1 1 4 1 True 4 4 0 0 TP
chr20 63559288 63559963 1 1 2 1 True 4 4 0 0 TP
chr20 63641779 63642135 1 1 2 1 True 2 2 0 0 TP
chr20 63669579 63670496 2 2 0 0 False 2 2 0 0 TP
chr20 63693325 63693884 1 1 6 1 True 10 10 0 0 TP
Expand All @@ -217,7 +217,7 @@ chr20 64042716 64043061 1 1 0 0 False 1 1 0 0 TP
chr20 64065853 64066011 0 0 0 1 False 0 0 0 1 FP
chr20 64090704 64091389 0 0 0 2 False 0 0 0 2 FP
chr20 64096658 64097164 0 0 0 2 False 0 0 0 2 FP
chr20 64125109 64127974 3 3 3 0 True 12 12 0 0 TP
chr20 64125109 64127974 3 3 2 0 True 12 12 0 0 TP
chr20 64131804 64133955 5 5 8 1 True 24 24 0 0 TP
chr20 64134883 64136386 3 3 1 0 True 4 4 0 0 TP
chr20 64157894 64158976 2 2 0 0 False 2 2 0 0 TP
Expand Down
14 changes: 7 additions & 7 deletions repo_utils/answer_key/refine/refine_output_one/refine.variant_summary.json
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Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
{
"TP-base": 593,
"TP-comp": 593,
"TP-base": 594,
"TP-comp": 594,
"FP": 15,
"FN": 2,
"precision": 0.975328947368421,
"recall": 0.9966386554621849,
"f1": 0.9858686616791356,
"base cnt": 595,
"comp cnt": 608
"precision": 0.9753694581280788,
"recall": 0.9966442953020134,
"f1": 0.9858921161825727,
"base cnt": 596,
"comp cnt": 609
}
16 changes: 8 additions & 8 deletions repo_utils/answer_key/refine/refine_output_three/refine.region_summary.json
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Original file line number Diff line number Diff line change
Expand Up @@ -2,17 +2,17 @@
"TP": 22,
"TN": 0,
"FP": 24,
"FN": 58,
"base P": 83,
"FN": 48,
"base P": 73,
"base N": 9,
"comp P": 91,
"comp P": 81,
"comp N": 1,
"PPV": 0.24175824175824176,
"TPR": 0.26506024096385544,
"PPV": 0.2716049382716049,
"TPR": 0.3013698630136986,
"TNR": 0.0,
"NPV": 0.0,
"ACC": 0.2391304347826087,
"BA": 0.13253012048192772,
"F1": 0.25287356321839083,
"ACC": 0.2682926829268293,
"BA": 0.1506849315068493,
"F1": 0.2857142857142857,
"UND": 0
}
24 changes: 7 additions & 17 deletions repo_utils/answer_key/refine/refine_output_three/refine.regions.txt
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Original file line number Diff line number Diff line change
@@ -1,37 +1,31 @@
chrom start end in_tpbase in_tp in_fn in_fp refined out_tpbase out_tp out_fn out_fp state
chr20 278819 279179 3 3 1 0 False 3 3 1 0 FN
chr20 641802 642530 3 3 2 0 False 3 3 2 0 FN
chr20 2240850 2241400 1 1 5 1 True 1 1 4 1 FN,FP
chr20 2240850 2241400 1 1 4 1 True 1 1 4 1 FN,FP
chr20 4032247 4033338 2 2 2 1 True 2 2 2 2 FN,FP
chr20 5040366 5040587 0 0 0 2 False 0 0 0 2 FP
chr20 5041831 5042378 1 1 1 1 True 2 2 0 0 TP
chr20 7720842 7721078 1 1 1 0 False 1 1 1 0 FN
chr20 8661834 8662229 1 1 3 1 True 4 4 0 0 TP
chr20 10802617 10802954 1 1 1 0 False 1 1 1 0 FN
chr20 13848162 13848654 3 3 1 0 False 3 3 1 0 FN
chr20 14861944 14862754 5 5 5 1 True 6 6 1 0 FN
chr20 16257744 16259315 2 2 2 0 False 2 2 2 0 FN
chr20 16395091 16395483 3 3 1 0 False 3 3 1 0 FN
chr20 17081183 17081475 2 2 1 0 False 2 2 1 0 FN
chr20 18209029 18210244 3 3 2 1 True 6 6 0 2 FP
chr20 20295904 20296440 2 2 2 1 True 5 5 0 0 TP
chr20 20320229 20320629 1 1 2 1 True 4 4 0 0 TP
chr20 20337175 20337734 1 1 6 2 True 3 3 0 0 TP
chr20 20354802 20355545 3 3 1 0 False 3 3 1 0 FN
chr20 20356420 20357920 4 4 8 1 True 9 9 2 0 FN
chr20 21120188 21120571 2 2 1 0 False 2 2 1 0 FN
chr20 20356420 20357920 4 4 7 1 True 9 9 2 0 FN
chr20 21721341 21721756 2 2 1 0 False 2 2 1 0 FN
chr20 22082156 22084015 4 4 3 1 True 3 3 4 1 FN,FP
chr20 23155468 23155967 3 3 2 2 True 4 4 1 1 FN,FP
chr20 23560829 23561208 1 1 2 2 True 2 2 0 0 TP
chr20 24407963 24408930 3 3 1 0 False 3 3 1 0 FN
chr20 24681956 24682235 2 2 1 0 False 2 2 1 0 FN
chr20 25781680 25781901 0 0 0 1 False 0 0 0 1 FP
chr20 32722934 32723155 0 0 1 0 False 0 0 1 0 FN
chr20 34235788 34236091 0 0 2 1 True 2 2 0 0 TP
chr20 35539102 35539692 4 4 1 0 False 4 4 1 0 FN
chr20 35580576 35580866 1 1 2 1 True 3 3 2 1 FN,FP
chr20 37361675 37361996 2 2 1 0 False 2 2 1 0 FN
chr20 38123689 38124113 2 2 1 4 True 3 3 3 4 FN,FP
chr20 38463887 38464454 2 2 2 0 False 2 2 2 0 FN
chr20 41196260 41196605 3 3 1 0 False 3 3 1 0 FN
Expand All @@ -44,11 +38,10 @@ chr20 50775536 50775942 1 1 2 1 True 1 1 0 1 FP
chr20 51953709 51953930 0 0 0 1 False 0 0 0 1 FP
chr20 53203989 53204362 2 2 2 1 True 2 2 0 0 TP
chr20 55624698 55625762 6 6 6 0 False 6 6 6 0 FN
chr20 55627528 55628415 7 7 4 0 False 7 7 4 0 FN
chr20 55627528 55628415 7 7 3 0 False 7 7 3 0 FN
chr20 55944162 55945285 2 2 2 1 True 2 2 2 0 FN
chr20 56280431 56282023 4 4 5 1 True 4 4 2 1 FN,FP
chr20 57090758 57091276 1 1 2 0 False 1 1 2 0 FN
chr20 57110340 57110703 2 2 1 0 False 2 2 1 0 FN
chr20 57190146 57190538 0 0 3 1 True 1 1 0 0 TP
chr20 57350746 57351030 1 1 1 0 False 1 1 1 0 FN
chr20 57948891 57949456 1 1 4 1 True 1 1 4 1 FN,FP
Expand All @@ -58,27 +51,24 @@ chr20 60702895 60703197 2 2 2 1 True 3 3 0 0 TP
chr20 61100811 61102515 1 1 4 1 True 4 4 0 0 TP
chr20 61201712 61202352 2 2 4 1 True 3 3 0 0 TP
chr20 61282815 61283589 4 4 2 0 False 4 4 2 0 FN
chr20 61289552 61290383 1 1 2 1 True 2 2 0 0 TP
chr20 61289552 61290383 1 1 1 1 True 2 2 0 0 TP
chr20 61329235 61329551 0 0 0 2 False 0 0 0 2 FP
chr20 61561999 61562362 0 0 2 1 True 1 1 0 0 TP
chr20 61744291 61744702 2 2 1 0 False 2 2 1 0 FN
chr20 61783848 61784808 3 3 1 0 False 3 3 1 0 FN
chr20 62057492 62058878 1 1 3 1 True 2 2 0 0 TP
chr20 62270303 62270937 1 1 3 1 True 4 4 0 0 TP
chr20 62321286 62321840 2 2 3 0 False 2 2 3 0 FN
chr20 62349531 62349936 1 1 5 1 True 1 1 2 1 FN,FP
chr20 62360300 62360712 0 0 8 2 True 4 4 2 1 FN,FP
chr20 62360300 62360712 0 0 7 2 True 4 4 2 1 FN,FP
chr20 62830540 62830807 2 2 1 1 True 1 1 0 0 TP
chr20 62875131 62875514 2 2 3 0 False 2 2 3 0 FN
chr20 63027956 63029140 4 4 1 1 True 3 3 0 0 TP
chr20 63048983 63049269 3 3 1 0 False 3 3 1 0 FN
chr20 63154577 63155031 1 1 1 0 False 1 1 1 0 FN
chr20 63167363 63167674 2 2 1 0 False 2 2 1 0 FN
chr20 63221399 63221831 1 1 2 1 True 2 2 0 0 TP
chr20 63372104 63372510 2 2 1 0 False 2 2 1 0 FN
chr20 63491847 63492500 1 1 3 1 True 4 4 0 0 TP
chr20 63535641 63536112 1 1 2 0 False 1 1 2 0 FN
chr20 63559305 63559829 1 1 4 1 True 5 5 0 0 TP
chr20 63559305 63559829 1 1 2 1 True 5 5 0 0 TP
chr20 63641737 63642125 1 1 2 1 True 3 3 0 0 TP
chr20 63693339 63693842 1 1 6 1 True 10 10 1 0 FN
chr20 63770826 63771124 0 0 0 2 False 0 0 0 2 FP
Expand All @@ -87,7 +77,7 @@ chr20 63964695 63966223 1 1 1 0 False 1 1 1 0 FN
chr20 64065772 64065993 0 0 0 1 False 0 0 0 1 FP
chr20 64090623 64091117 0 0 0 2 False 0 0 0 2 FP
chr20 64096929 64097150 0 0 0 2 False 0 0 0 2 FP
chr20 64125250 64127985 3 3 3 0 False 3 3 3 0 FN
chr20 64125250 64127985 3 3 2 0 False 3 3 2 0 FN
chr20 64131803 64133966 5 5 8 1 True 5 5 6 5 FN,FP
chr20 64134880 64136440 3 3 1 0 False 3 3 1 0 FN
chr20 64173328 64176440 4 4 7 3 True 9 9 3 6 FN,FP
8 changes: 4 additions & 4 deletions repo_utils/answer_key/refine/refine_output_three/refine.variant_summary.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@
"TP-base": 452,
"TP-comp": 452,
"FP": 43,
"FN": 107,
"FN": 95,
"precision": 0.9131313131313131,
"recall": 0.8085867620751341,
"f1": 0.857685009487666,
"base cnt": 559,
"recall": 0.8263254113345521,
"f1": 0.8675623800383877,
"base cnt": 547,
"comp cnt": 495
}
20 changes: 10 additions & 10 deletions repo_utils/answer_key/refine/refine_output_two/refine.regions.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -18,15 +18,15 @@ chr20 13848064 13848749 3 3 1 0 True 3 3 0 0 TP
chr20 14861837 14862841 5 5 5 1 True 15 15 0 0 TP
chr20 16226854 16228587 3 3 0 0 False 3 3 0 0 TP
chr20 16395049 16395521 3 3 1 0 True 3 3 0 0 TP
chr20 17081116 17081510 2 2 1 0 True 2 2 0 0 TP
chr20 17081116 17081510 2 2 0 0 False 2 2 0 0 TP
chr20 17197023 17197341 2 2 0 0 False 2 2 0 0 TP
chr20 18208997 18210827 3 3 2 1 True 5 5 0 0 TP
chr20 18675550 18676015 2 2 0 0 False 2 2 0 0 TP
chr20 19663266 19663626 2 2 0 0 False 2 2 0 0 TP
chr20 20337100 20337807 1 1 6 2 True 3 3 0 0 TP
chr20 20354470 20358423 7 7 9 1 True 16 16 0 0 TP
chr20 20354470 20358423 7 7 8 1 True 16 16 0 0 TP
chr20 20458540 20459037 2 2 0 0 False 2 2 0 0 TP
chr20 21120112 21120639 2 2 1 0 True 1 1 0 0 TP
chr20 21120112 21120639 2 2 0 0 False 2 2 0 0 TP
chr20 21721074 21721835 2 2 1 0 True 3 3 0 0 TP
chr20 22471731 22472229 2 2 0 0 False 2 2 0 0 TP
chr20 22882602 22882930 2 2 0 0 False 2 2 0 0 TP
Expand Down Expand Up @@ -61,11 +61,11 @@ chr20 50853539 50854028 2 2 0 0 False 2 2 0 0 TP
chr20 51500492 51500980 2 2 0 0 False 2 2 0 0 TP
chr20 53203887 53204573 2 2 2 1 True 4 4 0 0 TP
chr20 53415542 53415960 2 2 0 0 False 2 2 0 0 TP
chr20 55627244 55628550 7 7 4 0 True 8 8 0 0 TP
chr20 55627244 55628550 7 7 3 0 True 8 8 0 0 TP
chr20 55943819 55945907 2 2 2 1 True 5 5 0 0 TP
chr20 56284158 56284507 2 2 0 0 False 2 2 0 0 TP
chr20 56710455 56711293 2 2 0 0 False 2 2 0 0 TP
chr20 57110112 57110885 2 2 1 0 True 2 2 0 0 TP
chr20 57110112 57110885 2 2 0 0 False 2 2 0 0 TP
chr20 57417171 57418334 2 2 0 0 False 2 2 0 0 TP
chr20 57974704 57975302 2 2 0 0 False 2 2 0 0 TP
chr20 58196600 58197036 2 2 0 0 False 2 2 0 0 TP
Expand All @@ -82,8 +82,8 @@ chr20 61329158 61329677 0 0 0 2 False 0 0 0 2 FP
chr20 61331428 61331853 2 2 0 0 False 2 2 0 0 TP
chr20 61337105 61337690 2 2 0 0 False 2 2 0 0 TP
chr20 61475306 61475826 2 2 0 0 False 2 2 0 0 TP
chr20 61744088 61744754 2 2 1 0 True 2 2 0 0 TP
chr20 61783303 61784939 3 3 1 0 True 4 4 0 0 TP
chr20 61744088 61744754 2 2 0 0 False 2 2 0 0 TP
chr20 61783303 61784939 3 3 0 0 False 3 3 0 0 TP
chr20 61919576 61921474 2 2 0 0 False 2 2 0 0 TP
chr20 62057473 62059239 1 1 3 1 True 7 7 0 0 TP
chr20 62212744 62213974 4 4 0 0 False 4 4 0 0 TP
Expand All @@ -110,11 +110,11 @@ chr20 63293979 63294366 2 2 0 0 False 2 2 0 0 TP
chr20 63303555 63304958 2 2 0 0 False 2 2 0 0 TP
chr20 63334792 63335604 2 2 0 0 False 2 2 0 0 TP
chr20 63361174 63361571 2 2 0 0 False 2 2 0 0 TP
chr20 63371965 63372791 2 2 1 0 True 2 2 0 0 TP
chr20 63371965 63372791 2 2 0 0 False 2 2 0 0 TP
chr20 63450391 63450713 2 2 0 0 False 2 2 0 0 TP
chr20 63486663 63487516 2 2 0 0 False 2 2 0 0 TP
chr20 63491489 63493164 1 1 3 1 True 4 4 0 0 TP
chr20 63559188 63560063 1 1 4 1 True 4 4 0 0 TP
chr20 63559188 63560063 1 1 2 1 True 4 4 0 0 TP
chr20 63641679 63642235 1 1 2 1 True 2 2 0 0 TP
chr20 63669479 63670596 2 2 0 0 False 2 2 0 0 TP
chr20 63693225 63693984 1 1 6 1 True 10 10 0 0 TP
Expand All @@ -123,7 +123,7 @@ chr20 63824531 63825244 2 2 0 0 False 2 2 0 0 TP
chr20 63948414 63948858 2 2 1 1 True 3 3 0 0 TP
chr20 64090604 64091489 0 0 0 2 False 0 0 0 2 FP
chr20 64096558 64097264 0 0 0 2 False 0 0 0 2 FP
chr20 64125009 64128074 3 3 3 0 True 12 12 0 0 TP
chr20 64125009 64128074 3 3 2 0 True 12 12 0 0 TP
chr20 64131704 64134055 5 5 8 1 True 24 24 0 0 TP
chr20 64134783 64136486 3 3 1 0 True 4 4 0 0 TP
chr20 64173309 64176629 4 4 7 3 True 17 17 0 0 TP
Expand Down

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