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using `pool.imap_unordered` for haplotype creation made non-deterministic fastas. this resulted in fake_mafft needing multiple, redundant lookup md5sum. Furthermore, mafft appears to be sensitive to input sequence order which causes different msa results. Switching to `pool.imap` may be slightly slower but still keeps the memory saving compared to `pool.map` while also making phab results deterministic
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55 changes: 55 additions & 0 deletions
55
repo_utils/test_files/external/fake_mafft/lookup/fm_02b73a4f2fb9c7243d2ae74002dc5b27.msa
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| >syndip_1_chr20:16395049-16395522 | ||
| acagtcgtggacagcaaagctaaggctcagtacaacaaagggcatacccctgtcatcggt | ||
| gtcttcttactctctccctaatgtgatgtattcatcctcccagtttagtcaaggcagaaa | ||
| ggagatgaggaaggggagaggaggggagaggagggaagaggaggggaggggaggggagag | ||
| gaggagaggggaggagaggggaggccaagggaggggaggggaggggaggagaggggaggc | ||
| caagggaggggaggggaggggaggagaggggaggccaagggaggggaggggaggggagga | ||
| gaggggaggccaagggaggggaggggaggagaggggaggccaagggaggggaggggaggg | ||
| gaggagaggggaggccaagggaggggaggggaggggaggagaggggaggccaagggagaa | ||
| gatatgaaagaaatagggaaggagtgggacacagggaggaaaacaaaactatttcctttc | ||
| atataaatgttgtcatctggggagaagccctcactatctccttggtgcctttggcttttg | ||
| gtattcaaa | ||
| >syndip_2_chr20:16395049-16395522 | ||
| acagtcgtggacagcaaagctaaggctcagtacaacaaagggcatacccctgtcatcggt | ||
| gtcttcttactctctccctaatgtgatgtattcatcctcccagtttagtccaggcagaaa | ||
| ggagatgaggaaggggagaggaggggagaggaggggag---------------------- | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| -----------------------gggaggggaggggagaggaggggaggccaagggagaa | ||
| gatatgaaagaaatagggaaggagtgggacacagggaggaaaacaaaactatttcctttc | ||
| atataaatgttgtcatctggggagaagccctcactatctccttggtgcctttggcttttg | ||
| gtattcaaa | ||
| >p:HG002_1_chr20:16395049-16395522 | ||
| acagtcatggacagcaaagctaaggctcagtacaacaaagggcatacccctgtcattggt | ||
| gtcttcttactctctccctaatgtgatgtattcatcctcccagtttagtccaggcagaaa | ||
| ggagatgaggaaggggagaggaggggagaggaggggag---------------------- | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| -----------------------gggaggggaggggagaggaggggaggccaagggagaa | ||
| gatatgaaagaaatagggaaggagtgggacacagggaggaaaacaaaactatttcctttc | ||
| atataaatgttgtcatctggggagaagccctcactatctccttggtgcctttggcttttg | ||
| gtattcaaa | ||
| >p:HG002_2_chr20:16395049-16395522 | ||
| acagtcgtggacagcaaagctaaggctcagtacaacaaagggcatacccctgtcatcggt | ||
| gtcttcttactctctccctaatgtgatgtattcatcctcccagtttagtcaaggcagaaa | ||
| ggagatgaggaaggggagaggaggggagaggagggaagaggaggggaggggaggggagag | ||
| gaggagaggggaggagaggggaggccaagggaggggaggggaggggaggagaggggaggc | ||
| caagggaggggaggggaggggaggagaggggaggccaagggaggggaggggaggggagga | ||
| gaggggaggccaagggaggggaggggaggagaggggaggccaagggaggggaggggaggg | ||
| gaggagaggggaggccaagggaggggaggggaggggaggagaggggaggccaagggagaa | ||
| gatatgaaagaaatagggaaggagtgggacacagggaggaaaacaaaactatttcctttc | ||
| atataaatgttgtcatctggggagaagccctcactatctccttggtgcctttggcttttg | ||
| gtattcaaa | ||
| >ref_chr20:16395049-16395522 | ||
| acagtcgtggacagcaaagctaaggctcagtacaacaaagggcatacccctgtcatcggt | ||
| gtcttcttactctctccctaatgtgatgtattcatcctcccagtttagtcaaggcagaaa | ||
| ggagatgaggaaggggagaggaggggagaggagggaagaggaggggaggggaggggagag | ||
| gaggagaggggaggagaggggaggccaagggaggggaggggaggggaggagaggggaggc | ||
| caa-----gggaggggaggggaggagaggggaggccaagggaggggaggggaggggagga | ||
| gaggggaggccaa----------------------------------------------- | ||
| -----------------------gggaggggaggggaggagaggggaggccaagggagaa | ||
| gatatgaaagaaatagggaaggagtgggacacagggaggaaaacaaaactatttcctttc | ||
| atataaatgttgtcatctggggagaagccctcactatctccttggtgcctttggcttttg | ||
| gtattcaaa |
85 changes: 85 additions & 0 deletions
85
repo_utils/test_files/external/fake_mafft/lookup/fm_047c63d2654e7637150b4279117c89de.msa
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,85 @@ | ||
| >syndip_1_chr20:62360090-62360813 | ||
| aaggacatttccccaccccactccagggagtccctgcccccaccctgaccaaggctggca | ||
| gccccctggcctaggccgagacaggggccttggtagatacatccacgtggtcaggaaagt | ||
| gggtgagaaggaaggaagacggtgcaggtgtggagggaggaatgagcagacaggtggaca | ||
| gatggatggaaacaaggaataaagggtgggtgctgcataggtaggggggtgggtgggtgg | ||
| atggatgggtagggggtgggtgggtggatacgttgggggtgggtgggtgggtgggtcagc | ||
| aggcagagggatgggataggataggtgggtgggtgggtggatagggagggggtggggtgg | ||
| gtgcataggtaggggggtggatgggtcagcaggcagcgggatgggataggataggtgggt | ||
| gggtggagggatagatgggtggtgggtgggtggagggatagatgggtgggtgggtgggta | ||
| gaaggataggtaggtgggtgggtgggtggatggataggtggatgggtgggtggaggaata | ||
| gatgggtgggtgggtgggtgggtggatggataggtgggtgggtgggtggagggatagatg | ||
| ggtgggtggatgggtgggtggagggatagatgggtggtgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtagaaggataggtaggtgggtgggtgggtggatggataggtgggtgg | ||
| gtgggtggaggaata--------gatgggtgggtggatgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtggagggatagatgggtgggtgggtggagggaccacttcccaggtgg | ||
| agtggaaagggttcctcttccctccgtatcattttacagttggtgaaactgaggctgtga | ||
| gaggcaagacgctcacatggcggaacctgatttctggcccagaacaatctaaaagc | ||
| >syndip_2_chr20:62360090-62360813 | ||
| aaggacatttccccaccccactccagggagtccctgcccccaccctgaccaaggctggca | ||
| gccccctggcctaggccgagacaggggccttggtagatacatccacgtggtcaggaaagt | ||
| gggtgagaaggaaggaagacggtgcaggtgtggagggaggaatgagcagacaggtggaca | ||
| gatggatggaaacaaggaataaagggtgggtgctgcataggtaggggggtgggtgggtgg | ||
| atggatgggtagggggtgggtgggtggatacgttgggggtgggtgggtgggtgggtcagc | ||
| aggcaga----------------------------------------------------- | ||
| -------------------------------------gggatgggataggataggtgggt | ||
| gggtggagggatagatgggtggtgggtgggtggagggatagatgggtgggtggagggata | ||
| ----------------------------------------gatgggtgggtgggtagaag | ||
| gataggtaggtgggtgggtgggtggatggataggtggatgggtgggtggaggaatagatg | ||
| ggtg-------------------------------------------------------- | ||
| ---------------------------ggtgggtgggtgggtggatggataggtgggtgg | ||
| gtgggtggaggaata--------gatgggtgggtggatgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtggagggatagatgggtgggtgggtggagggaccacttcccaggtgg | ||
| agtggaaagggttcctcttccctccgtatcattttacagttggtgaaactgaggctgtga | ||
| gaggcaagacgctcacatggcggaacctgatttctggcccagaacaatctaaaagc | ||
| >p:HG002_1_chr20:62360090-62360813 | ||
| aaggacatttccccaccccactccagggagtccctgcccccaccctgaccaaggctggca | ||
| gccccctggcctaggccgagacaggggccttggtagatacatccacgtggtcaggaaagt | ||
| gggtgagaaggaaggaagacggtgcaggtgtggagggaggaatgagcagacaggtggaca | ||
| gatggatggaaacaaggaataaagggtgggtgctgcataggtaggggggtgggtgggtgg | ||
| atggatgggtagggggtgggtgggtggatacgttgggggtgggtgggtgggtgggtcagc | ||
| aggcaga----------------------------------------------------- | ||
| -------------------------------------gggatgggataggataggtgggt | ||
| gggtggagggatagatgggtggtgggtgggtggagggatagatgggtgggtggagggata | ||
| ----------------------------------------gatgggtgggtgggtagaag | ||
| gataggtaggtgggtgggtgggtggatggataggtggatgggtgggtggaggaatagatg | ||
| ggtg-------------------------------------------------------- | ||
| ---------------------------ggtgggtgggtgggtggatggataggtgggtgg | ||
| gtgggtggaggaata--------gatgggtgggtggatgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtggagggatagatgggtgggtgggtggagggaccacttcccaggtgg | ||
| agtggaaagggttcctcttccctccgtatcattttacagttggtgaaactgaggctgtga | ||
| gaggcaagacgctcacatggcggaacctgatttctggcccagaacaatctaaaagc | ||
| >p:HG002_2_chr20:62360090-62360813 | ||
| aaggacatttccccaccccactccagggagtccctgcccccaccctgaccaaggctggca | ||
| gccccctggcctaggccgagacaggggccttggtagatacatccacgtggtcaggaaagt | ||
| gggtgagaaggaaggaagacggtgcaggtgtggagggaggaatgagcagacaggtggaca | ||
| gatggatggaaacaaggaataaagggtgggtgctgcataggtaggggggtgggtgggtgg | ||
| atggatgggtagggggtgggtgggtggatacgttgggggtgggtgggtgggtgggtcagc | ||
| aggcagagggatgggataggataggtgggtgggtgggtggatagggagggggtggggtgg | ||
| gtgcataggtaggggggtggatgggtcagcaggcagcgggatgggataggataggtgggt | ||
| gggtggagggatagatgggtggtgggtgggtggagggatagatgggtgggtgggtgggta | ||
| gaaggataggtaggtgggtgggtgggtggatggataggtggatgggtgggtggaggaata | ||
| gatgggtgggtgggtgggtgggtggatggataggtgggtgggtgggtggagggatagatg | ||
| ggtgggtggatgggtgggtggagggatagatgggtggtgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtagaaggataggtaggtgggtgggtgggtggatggataggtgggtgg | ||
| gtgggtggaggaata--------gatgggtgggtggatgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtggagggatagatgggtgggtgggtggagggaccacttcccaggtgg | ||
| agtggaaagggttcctcttccctccgtatcattttacagttggtgaaactgaggctgtga | ||
| gaggcaagacgctcacatggcggaacctgatttctggcccagaacaatctaaaagc | ||
| >ref_chr20:62360090-62360813 | ||
| aaggacatttccccaccccactccagggagtccctgcccccaccctgaccaaggctggca | ||
| gccccctggcctaggccgagacaggggccttggtagatacatccacgtggtcaggaaagt | ||
| gggtgagaaggaaggaagacggtgcaggtgtggagggaggaatgagcagacaggtggaca | ||
| gatggatggaaacaaggaataaagggtgggtgctgcataggtaggggggtgggtgggtgg | ||
| atggatgggta-ggggtgggtgggtggatacgttgggggtgggtgggtgggtgggtcagc | ||
| aggcaga----------------------------------------------------- | ||
| -------------------------------------gggatgggataggataggtgggt | ||
| gggtggagggatgggtg---agtgggtgggtggagggatagatgggtgg----------- | ||
| ------------------------------------------tgggtgggtggagggata | ||
| gatgggt-ggtgggtgggtggagggatagatgggtgggtgggtgggtggagggatagatg | ||
| ggt--------------------------------------------------------- | ||
| ---------------------------ggtgggtgggtggagggatagatgggtggatgg | ||
| gtgggtagaaggataggtaggtgggtgggtgggtggatgggtgggtggagggatagatgg | ||
| gtgggtgggtgggtggagggatagatgggtgggtgggtggagggaccacttcccaggtgg | ||
| agtggaaagggttcctcttccctccgtatcattttacagttggtgaaactgaggctgtga | ||
| gaggcaagacgctcacatggcggaacctgatttctggcccagaacaatctaaaagc |
115 changes: 115 additions & 0 deletions
115
repo_utils/test_files/external/fake_mafft/lookup/fm_04f59078ccc583035a295f8ad3526dbf.msa
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,115 @@ | ||
| >syndip_1_chr20:21721074-21721836 | ||
| agtagggacttgctttgggtcacagtcagcttttattagtgttattattgttgctgtttt | ||
| cttctttttctttgtacatcaacgttttatggtgaattaaatcgtgttttaaccttgtag | ||
| accacattggctattacatatatatatataatatatatgtaatatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatatgtaatgtatataatatatatgtaatacatatat | ||
| attatatatgtatataatacatatatatgtatatatatgtatgtatatatatatgtatat | ||
| atgtatatatatatgtatataatacatatatatacatatatattatatatgtaatacata | ||
| tataatatatatgtaatgtatatatatgtaatgtatataatatatatgtaatacatatat | ||
| aatatatatgtaatgtatataatatatatgtaatacatatataatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatgtatgtaatacatatattatatatgtaatgtatat | ||
| tatatatgtattacatatatgtattacatatataacatatatgtattacatatatgtatt | ||
| acatatataacatatatgtattacatatatgtattacatatataacatatatgtattaca | ||
| tatatgtattacatatataacatatatgtaatacatatatgtattacatatataacatat | ||
| atgtattacatatatgtattacatatataacatatatgtattacatatatgtattacata | ||
| tataacatatatgtattacatatatgtattacatatataacatatatgtattacatatat | ||
| gtattacatatataacatatatgtattacatatatgtaatacatatataacatatatgta | ||
| ttacatatatgtaatacatatataacatatatgtattacatatatgtaatacatatataa | ||
| catatatgtattacatatatgtaatacatatataac----atgtattacatatatgtaat | ||
| acatatataac--------------------------atgtattacatatatgtaataca | ||
| tatataacatgtattacatatatgtaatacacatataatatatatgttatatatatatat | ||
| atatataaaattttttaaaaaattgtttcttgagatagggtctcactctgtcacccaggc | ||
| tggagtataatggtttgatcatagttcactgcagccttgaacttctagactcaggtgatc | ||
| ctcccacctcaacctcct | ||
| >syndip_2_chr20:21721074-21721836 | ||
| agtagggacttgctttgggtcacagtcagcttttattagtgttattattgttgctgtttt | ||
| cttctttttctttgtacatcaacgttttatggtgaattaaatcgtgttttaaccttgtag | ||
| accacattggctattacatatatatatataatatatatgtaatatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatatgtaatgtatataatacatatgtaatacatatat | ||
| attatatatgtatataatacatatatatgtatatatatgtatgtatatatatatgtatat | ||
| atgtatatatatatgtatataatacatatatatacatatatattatatatgtaatacata | ||
| tataatatatatgtaatgtatatatatgtaatgtatataatatatatgtaatacatatat | ||
| aatatatatgtaatgtatataatatatatgtaatacatatataatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatgtatgtaatacatatattatatatgtaatgtatat | ||
| tatatatgtattacatatatgtattacatatataacatatatgtattacatatatgtatt | ||
| acatatataacatatatgtattacatatatgtattacatatataacatatatgtattaca | ||
| tatatgtattacatatataacatatatgtattacatatatgtattacatatataacatat | ||
| atgtattacatatatgtattacatatataacatatatgtattacatatatgtattacata | ||
| tataacatatatgtattacatatatgtattacatatataacatatatgtattacatatat | ||
| gtattacatatataacatatatgtattacatatatgtattacatatataacatatatgta | ||
| ttacatatatgtattacatatataacatatatgtattacatatatgtattacatatataa | ||
| catatatgtattacatatatgtaatacatatataacatatatgtattacatatatgtaat | ||
| acatatataacatatatgtaatacatatataacatatatgtattacatatatgtaataca | ||
| tatataacatgtattacatatatgtaatacacatataatatatatgttatatatatatat | ||
| atatataaaattttttaaaaaattgtttcttgagatagggtctcactctgtcacccaggc | ||
| tggagtataatggtttgatcatagttcactgcagccttgaacttctagactcaggtgatc | ||
| ctcccacctcaacctcct | ||
| >p:HG002_1_chr20:21721074-21721836 | ||
| agtagggacttgctttgggtcacagtcagcttttattagtgttattattgttgctgtttt | ||
| cttctttttctttgtacatcaacgttttatggtgaattaaatcgtgttttaaccttgtag | ||
| accacattggctattacatatatatatataatatatatgtaatatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatatgtaatgtatataatacatatgtaatacatatat | ||
| attatatatgtatataatacatatatatgtatatatatgtatgtatatatatatgtatat | ||
| atgtatatatatatgtatataatacatatatatacatatatattatatatgtaatacata | ||
| tataatatatatgtaatgtatatatatgtaatgtatataatatatatgtaatacatatat | ||
| aatatatatgtaatgtatataatatatatgtaatacatatataatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatgtatgtaatacatatattatatatgtaatgtatat | ||
| tatatatgtattacatatatgtattacatatataacatatatgtattacatatatgtatt | ||
| acatatataacatatatgtattacatatatgtattacatatataacatatatgtattaca | ||
| tatatgtattacatatataacatatatgtattacatatatgtattacatatataacatat | ||
| atgtattacatatatgtattacatatataacatatatgtattacatatatgtattacata | ||
| tataacatatatgtattacatatatgtattacatatataacatatatgtattacatatat | ||
| gtattacatatataacatatatgtattacatatatgtattacatatataacatatatgta | ||
| ttacatatatgtattacatatataacatatatgtattacatatatgtattacatatataa | ||
| catatatgtattacatatatgtaatacatatataacatatatgtattacatatatgtaat | ||
| acatatataacatatatgtaatacatatataacatatatgtattacatatatgtaataca | ||
| tatataacatgtattacatatatgtaatacacatataatatatatgttatatatatatat | ||
| atatataaaattttttaaaaaattgtttcttgagatagggtctcactctgtcacccaggc | ||
| tggagtataatggtttgatcatagttcactgcagccttgaacttctagactcaggtgatc | ||
| ctcccacctcaacctcct | ||
| >p:HG002_2_chr20:21721074-21721836 | ||
| agtagggacttgctttgggtcacagtcagcttttattagtgttattattgttgctgtttt | ||
| cttctttttctttgtacatcaacgttttatggtgaattaaatcgtgttttaaccttgtag | ||
| accacattggctattacatatatatatataatatatatgtaatatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatatgtaatgtatataatatatatgtaatacatatat | ||
| attatatatgtatataatacatatatatgtatatatatgtatgtatatatatatgtatat | ||
| atgtatatatatatgtatataatacatatatatacatatatattatatatgtaatacata | ||
| tataatatatatgtaatgtatatatatgtaatgtatataatatatatgtaatacatatat | ||
| aatatatatgtaatgtatataatatatatgtaatacatatataatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatgtatgtaatacatatattatatatgtaatgtatat | ||
| tatatatgtattacatatatgtattacatatataacatatatgtattacatatatgtatt | ||
| acatatataacatatatgtattacatatatgtattacatatataacatatatgtattaca | ||
| tatatgtattacatatataacatatatgtaatacatatatgtattacatatataacatat | ||
| atgtattacatatatgtattacatatataacatatatgtattacatatatgtattacata | ||
| tataacatatatgtattacatatatgtattacatatataacatatatgtattacatatat | ||
| gtattacatatataacatatatgtattacatatatgtaatacatatataacatatatgta | ||
| ttacatatatgtaatacatatataacatatatgtattacatatatgtaatacatatataa | ||
| catatatgtattacatatatgtaatacatatataac----atgtattacatatatgtaat | ||
| acatatataac--------------------------atgtattacatatatgtaataca | ||
| tatataacatgtattacatatatgtaatacacatataatatatatgttatatatatatat | ||
| atatataaaattttttaaaaaattgtttcttgagatagggtctcactctgtcacccaggc | ||
| tggagtataatggtttgatcatagttcactgcagccttgaacttctagactcaggtgatc | ||
| ctcccacctcaacctcct | ||
| >ref_chr20:21721074-21721836 | ||
| agtagggacttgctttgggtcacagtcagcttttattagtgttattattgttgctgtttt | ||
| cttctttttctttgtacatcaacgttttatggtgaattaaatcgtgttttaaccttgtag | ||
| accacattggctattacatatatatatataatatatatgtaatatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatatgtaatgtatataatatatatgtaatacatatat | ||
| attatatatgtatataatacatatatatgtatatatatgtatgtatatatatatgtatat | ||
| atgtatatatatatgtatataatacatatatatacatatatattatatatgtaatacata | ||
| tataatatatatgtaatgt----------------------------------------- | ||
| -atatatatgtaatgtatataatatatatgtaatacatatataatatatatgtaatgtat | ||
| attatatatgtaatgtatataatatgtatgtaatacatatattatatatgtaatgtatat | ||
| tatatatgtattacatatatgtattacatatataacatatatgtattacatatatgtatt | ||
| acatatataacatatatgtattacatatatgtaatacacatataatatatatgttatata | ||
| tatatatat--------------------------------------------------- | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| ------------------------------------------------------------ | ||
| --atataaaattttttaaaaaattgtttcttgagatagggtctcactctgtcacccaggc | ||
| tggagtataatggtttgatcatagttcactgcagccttgaacttctagactcaggtgatc | ||
| ctcccacctcaacctcct |
75 changes: 75 additions & 0 deletions
75
repo_utils/test_files/external/fake_mafft/lookup/fm_05d37467dfbfe82df764ccf557e66822.msa
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| >syndip_1_chr20:50775444-50776124 | ||
| tgaacaaagtgaactaatagtagttcacgaaatctactggtttataatgtcacataccaa | ||
| aggcttgtgtctttaaatctatctctagacttggtattctgctttctcattctgtctctc | ||
| caaagatttcc--------------------atatatatatatatatatatataaatata | ||
| aatatattctatatattcatatatatatattctatatattcatatatataaatatattct | ||
| atatattcatatatataaatatattctatatattcatatataaatatattccatatatat | ||
| aaatatattccatatatttatatataaatatatatcatatatttatatataaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatcatatattta | ||
| tatataaatatatatcatatatttatatataaatatatatcatatatttatatataatat | ||
| atatcatatattatatataaatatatatcatatatttatatataaatatatatcatatat | ||
| taatatatatcatatatttatatattaatatatatcatatatttatatattaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatctacattttt | ||
| tgagacagagtctggctctgtcaccccagctggagtgcagtggtacgatctcagctcatt | ||
| gcaacctccacctcccaggttcaagcgattctcgtgcctcagcctccatagtagctggaa | ||
| tt | ||
| >syndip_2_chr20:50775444-50776124 | ||
| tgaacaaagtgaactaatagtagttcacgaaatctactggtttataatgtcacataccaa | ||
| aggcttgtgtctttaaatctatctctagacttggtattctgctttctcattctgtctctc | ||
| caaagatttccatatatatatatatatatatatatatatatatatatatatataaatata | ||
| aatatattctatatattcatatatatatattctatatattcatatatataaatatattct | ||
| atatattcatatatataaatatattctatatattcatatataaatatattccatatatat | ||
| aaatatattc-------------------------catatatttatatataaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatcatatattta | ||
| tatataaatatatatcatatatttatatataaatatatatcatatatttatatataatat | ||
| atatcatatattatatataaatatatatcatatatttatatataaatatatatcatatat | ||
| taatatatatcatatatttatatattaatatatatcatatatttatatattaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatctacattttt | ||
| tgagacagagtctggctctgtcaccccagctggagtgcagtggtacgatctcagctcatt | ||
| gcaacctccacctcccaggttcaagcgattctcgtgcctcagcctccatagtagctggaa | ||
| tt | ||
| >p:HG002_1_chr20:50775444-50776124 | ||
| tgaacaaagtgaactaatagtagttcacgaaatctactggtttataatgtcacataccaa | ||
| aggcttgtgtctttaaatctatctctagacttggtattctgctttctcattctgtctctc | ||
| caaagatttccatatatatatatatatatatatatatatatatatatatatataaatata | ||
| aatatattctatatattcatatatatatattctatatattcatatatataaatatattct | ||
| atatattcatatatataaatatattctatatattcatatataaatatattccatatatat | ||
| aaatatattc-------------------------catatatttatatataaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatcatatattta | ||
| tatataaatatatatcatatatttatatataaatatatatcatatatttatatataatat | ||
| atatcatatattatatataaatatatatcatatatttatatataaatatatatcatatat | ||
| taatatatatcatatatttatatattaatatatatcatatatttatatattaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatctacattttt | ||
| tgagacagagtctggctctgtcaccccagctggagtgcagtggtacgatctcagctcatt | ||
| gcaacctccacctcccaggttcaagcgattctcgtgcctcagcctccatagtagctggaa | ||
| tt | ||
| >p:HG002_2_chr20:50775444-50776124 | ||
| tgaacaaagtgaactaatagtagttcacgaaatctactggtttataatgtcacataccaa | ||
| aggcttgtgtctttaaatctatctctagacttggtattctgctttctcattctgtctctc | ||
| caaagatttcc--------------------atatatatatatatatatatataaatata | ||
| aatatattctatatattcatatatatatattctatatattcatatatataaatatattct | ||
| atatattcatatatataaatatattctatatattcatatataaatatattccatatatat | ||
| aaatatattccatatatttatatataaatatatatcatatatttatatataaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatcatatattta | ||
| tatataaatatatatcatatatttatatataaatatatatcatatatttatatataatat | ||
| atatcatatattatatataaatatatatcatatatttatatataaatatatatcatatat | ||
| taatatatatcatatatttatatattaatatatatcatatatttatatattaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatctacattttt | ||
| tgagacagagtctggctctgtcaccccagctggagtgcagtggtacgatctcagctcatt | ||
| gcaacctccacctcccaggttcaagcgattctcgtgcctcagcctccatagtagctggaa | ||
| tt | ||
| >ref_chr20:50775444-50776124 | ||
| tgaacaaagtgaactaatagtagttcacgaaatctactggtttataatgtcacataccaa | ||
| aggcttgtgtctttaaatctatctctagacttggtattctgctttctcattctgtctctc | ||
| caaagatttccatatatatatatatatatatatatatatatatatatatatataaatata | ||
| aatatattctatatattcatatat---------------------------atatattct | ||
| atatattcatatatataaatatattctatatattcatatataaatatattccatatatat | ||
| aaatatattc-------------------------catatatttatatataaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatcatatattta | ||
| tatat-aatatatatcatatat-------------------------------------- | ||
| ----------ttatatataaatatatatcatatatttatatataaatatatatcatatat | ||
| taatatatatcatatatttatatattaatatatatcatatatttatatattaatatatat | ||
| catatatttatatataaatatatatcatatatttatatataaatatatatctacattttt | ||
| tgagacagagtctggctctgtcaccccagctggagtgcagtggtacgatctcagctcatt | ||
| gcaacctccacctcccaggttcaagcgattctcgtgcctcagcctccatagtagctggaa | ||
| tt |
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