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slimming down vignette .RData
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alexmacphail committed Oct 16, 2023
1 parent f2366ba commit 789683b
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2 changes: 1 addition & 1 deletion docs/pkgdown.yml
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Expand Up @@ -7,7 +7,7 @@ articles:
apis: apis.html
audio-data-concepts: audio-data-concepts.html
introduction: introduction.html
last_built: 2023-10-12T19:44Z
last_built: 2023-10-16T19:41Z
urls:
reference: https://abbiodiversity.github.io/wildRtrax/reference
article: https://abbiodiversity.github.io/wildRtrax/articles
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4 changes: 2 additions & 2 deletions vignettes/acoustic-data-wrangling.Rmd
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Expand Up @@ -20,7 +20,7 @@ knitr::opts_chunk$set(
comment = '#>'
)
load("book.RData")
load("package.RData")
```

```{r setup, echo=FALSE, include=FALSE, eval=TRUE}
Expand All @@ -33,7 +33,7 @@ library(tidyverse)
# Start by getting everything you need
Sys.setenv(WT_USERNAME = 'guest', WT_PASSWORD = 'Apple123')
wt_auth()
my_report <- wt_download_report(project_id = 379, sensor_id = 'ARU', reports = "main", weather_cols = F) %>%
my_report <- wt_download_report(project_id = 605, sensor_id = 'ARU', reports = "main", weather_cols = F) %>%
tibble::as_tibble()
```

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4 changes: 3 additions & 1 deletion vignettes/acoustic-pre-processing.Rmd
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Expand Up @@ -25,7 +25,7 @@ library(wildRtrax)
library(tidyverse)
# Set the directory path
load("book.RData")
load("package.RData")
#save.image("book.RData")
```
Expand Down Expand Up @@ -156,6 +156,8 @@ wt_kaleidoscope_tags(
tz,
freq_bump = T) # Add a frequency buffer to the tag, e.g. 20000 kHz
songscope_tags
```

If you've already uploaded recordings to WildTrax, scan your media using `wt_audio_scanner()` and a relative folder path.
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12 changes: 6 additions & 6 deletions vignettes/apis.Rmd
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Expand Up @@ -57,12 +57,12 @@ Using the project_id number in the download summary you can then use `wt_downloa

```{r echo=TRUE, include=TRUE, eval=F, warning = FALSE, message = FALSE}
# Download the project report
my_report <- wt_download_report(project_id = 379, sensor_id = 'ARU', reports = "main", weather_cols = F) %>%
my_report <- wt_download_report(project_id = 605, sensor_id = 'ARU', reports = "main", weather_cols = F) %>%
tibble::as_tibble()
```
```{r echo=F, include=F, eval=T, warning = FALSE, message = FALSE}
# Download the project report
my_report <- wt_download_report(project_id = 379, sensor_id = 'ARU', reports = "main", weather_cols = F) %>%
my_report <- wt_download_report(project_id = 605, sensor_id = 'ARU', reports = "main", weather_cols = F) %>%
tibble::as_tibble()
```
```{r}
Expand Down Expand Up @@ -100,11 +100,11 @@ WildTrax also pre-formats ARU to point count (PC) data depending on the type of

```{r, echo=T, include=T, eval=F, warning=F, message = FALSE}
# As point count format
aru_as_aru <- wt_download_report(project_id = 379 , sensor_id = 'ARU', reports = "main", weather_cols = F)
aru_as_aru <- wt_download_report(project_id = 605 , sensor_id = 'ARU', reports = "main", weather_cols = F)
```
```{r, echo=F, include=F, eval=T, warning=F, message = FALSE}
# As point count format
aru_as_aru <- wt_download_report(project_id = 379, sensor_id = 'ARU', reports = "main", weather_cols = F)
aru_as_aru <- wt_download_report(project_id = 605, sensor_id = 'ARU', reports = "main", weather_cols = F)
```
```{r}
# As point count format
Expand All @@ -113,11 +113,11 @@ head(aru_as_aru)
```
```{r, echo=T, include=T, eval=F, warning=F, message = FALSE}
# As ARU format
aru_as_pc <- wt_download_report(project_id = 379, sensor_id = 'PC', reports = "main", weather_cols = F)
aru_as_pc <- wt_download_report(project_id = 605, sensor_id = 'PC', reports = "main", weather_cols = F)
```
```{r, echo=F, include=F, eval=T, warning=F, message = FALSE}
# As ARU format
aru_as_pc <- wt_download_report(project_id = 379, sensor_id = 'PC', reports = "main", weather_cols = F)
aru_as_pc <- wt_download_report(project_id = 605, sensor_id = 'PC', reports = "main", weather_cols = F)
```
```{r}
# As point count format
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