Code

Test uterus network#238

Code

Merged

rchristie merged 82 commits intoABI-Software:mainABI-Software/scaffoldmaker:mainfrom zekh167:test_uterus_networkzekh167/scaffoldmaker:test_uterus_networkCopy head branch name to clipboardSep 15, 2023

+2,946

Commits

Commits on Jul 19, 2023

• Added new meshtype.

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  9908d3d

• Added uterus terms.

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  2b04038

• Added uterus scaffold for sheep.

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  f4841eb

• First try to add the rat uterus.

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  49b7579

Commits on Jul 20, 2023

• Add a function to create cervix nodes.

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  7d95b84

Commits on Jul 30, 2023

• Added inner and outer nodes in bifurcation.

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  dc4ffcf

Commits on Jul 31, 2023

• Created right part elements in the bifurcation.

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  b37b56b

Commits on Aug 1, 2023

• Added septum nodes in bifurcation.

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• Added cervix right elements.

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• Remap the derivatives for cervix right part elements.

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  a81c77a

Commits on Aug 2, 2023

• Added d3 for bifurcation nodes for mapping the derivatives.

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  5a43006

• Mapped the derivatives in bifurcation(right part of parent).

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• Removed extra lines.

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• Added cervix left canal elements and remapped the derivatives.

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  bab0042

Commits on Aug 3, 2023

• Create elements of left tube and parent parts in bifurcation.

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• Removed extra lines.

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  5bc845f

• Changed cervix layout for rat.

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• modified remapping the derivatives.

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  a8b75f8

Commits on Aug 4, 2023

• Added the node identifiers for elements of right fundus.

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  eec089b

Commits on Aug 9, 2023

• Rearrange the functions order.

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Commits on Aug 10, 2023

• Added d3 for inner right and outer bifurcation nodes.

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  dd19299

Commits on Aug 13, 2023

• Changed the elements to cube for right part of bifurcation in rat.

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  f591fd7

• Changed the elements to cube for left part of bifurcation in rat.

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  98a0336

• Modified bifurcation elements.

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• Modified cervix left elements.

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Commits on Aug 14, 2023

• Changed elementsCountAcross.

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• Changed elementsCountAcross.

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  1ba434c

Commits on Aug 16, 2023

• Added body to annotation terms.

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  0cf849d

• Added and modified inner bifurcation nodes d3.

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• Added rod3 for left part.

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  2884789

• Modified d3 for cox nodes in bifurcation.

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  947c2e6

• Found d3 for outer cervix nodes.

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  dcedc38

• Found d3 for inner cervix right and left canals' nodes.

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  0f43df1

Commits on Aug 17, 2023

• Added double uterus parameter.

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  9ad5d11

• Added vagina nodes and elements to rat uterus scaffold.

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  f997321

• Renamed the function.

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• Renamed the functions.

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  4c52959

Commits on Aug 18, 2023

• Added the cervix as a separate part in network layout.

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  2219e91

• Made changes for having different number of elements around horns and body.

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  3e2cf2f

Commits on Aug 21, 2023

• Added nodes through wall for body, cervix and vagina parts.

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• Added inner nodes for bifurcation part.

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• Added bifurcation outer nodes.

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Commits on Aug 22, 2023

• Added right double-tube elements.

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• Added left double-tube elements.

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• Changed the order of elements for left and right horns.

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• Added bifurcation right tube elements.

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• Added bifurcation left tube elements.

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  e482d06

• Added bifurcation parent elements.

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• Fixed the number of elements.

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  ba27d6c

Commits on Aug 23, 2023

• Created d3 for required nodes.

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• Hide use linear through wall.

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  bf8010d

• Added Mouse 2 for test.

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• Used double uterus option through to uterus function.

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  d281a76

Commits on Aug 24, 2023

• Fixed d3 and body part for e lower than 2.

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  3d6b048

• Fixed derivatives mapping in bifurcation.

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  000909a

• Changed mouse network layout.

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  94a620d

• Changed some parameters.

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  70d4ec7

Commits on Aug 27, 2023

• Removed a repeated function.

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  99b7cfd

• Changed some functions and parameters names.

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• Changed some functions and parameters names.

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  f4d03fe

• Cleaned the code.

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• Removed unused parameters.

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• Changed the function name and parameters.

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• Changed the function name and parameters.

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• Made the function names consistent.

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• Changed two function names.

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• Changed the functions order.

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• Removed extra lines.

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• Modified functions documentation.

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  4482e76

• Changed the function name.

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• Merge remote-tracking branch 'abi/main' into test_uterus_network

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  3f9ba33

Commits on Aug 28, 2023

• Changed function name from tubemesh.

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• Cleaned the code.

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  759cbf6

Commits on Aug 29, 2023

• Changed the scaffold to be created inward.

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• Changed some parameters.

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• Added different number of around for horns and body in case of single tube.

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Commits on Aug 30, 2023

• Comment off creating nodes and elements for rat vagina.

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• Changed the material network layout.

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• Cleaned the code.

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• Correct the typo.

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  91982ae

Commits on Aug 31, 2023

• Made changes to hide the vagina for rat.

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• Cleaned the code.

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