Update docs to list where data for scaffold came from #218
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rchristie
requested changes
Nov 16, 2022
docs/scaffolds/brainstem.rst
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| <https://doi.org/10.1093/nar/gkn613>`_), a pig (Beckman Institute for Advanced Science and Technology, Pig Imaging Group, | ||
| University Of Illinois Urbana-Champaign), a rat | ||
| (`NeuroRat V4.0 <https://itis.swiss/virtual-population/animal-models/animals/neurorat/neurorat-v4/>`_), and a sheep | ||
| (`Nitzsche et al. <https://doi: 10.3389/fnana.2015.00069>`_). |
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I think this link should be:
https://doi.org/10.3389/fnana.2015.00069
docs/scaffolds/heart.rst
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| The heart scaffold script generates the scaffold mesh and geometry from ellipsoid and cubic functions with many parameters controlling the shape. The parameters were carefully tuned for each species, and it is not recommended that these be edited. | ||
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| The rat heart scaffold was calibrated using segmented image data provided from James Schwaber et al. (Thomas Jefferson University). Human and pig hearts were calibrated using data from the literature. |
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Clara Leung, Jack Zixi Cheng, Raj Vadigepalli, James Schwaber et al. (TJU, UCF), in SPARC dataset <https://doi.org/10.26275/pb3l-251h>_.
docs/scaffolds/stomach.rst
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| @@ -38,6 +39,10 @@ Note that the D2 and D3 derivatives control the side dimensions, and derivatives | |||
| of these along the central path. If editing, use the Interactive Functions to *Smooth derivatives*, | |||
| *Make side derivatives normal* and *Smooth side cross derivatives* to make these as smooth as required. | |||
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| The rat stomach scaffold is parameterized with average data from segmentation of Micro-CT image data of 11 animals | |||
| performed at the Powley laboratory using Neurolucida (MBF Bioscience), while the human, mouse, and pig stomach scaffolds | |||
| are parameterized with literature data to represent the anatomy as accurate as possible. | |||
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