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Updated mouse parameters and ILX for lung terms #144

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May 25, 2021
Merged

Updated mouse parameters and ILX for lung terms #144

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02ea480
Updated lung annotations and added ILX numbers
arti-sukasem May 21, 2021
911c5d3
Updated mouse parameters
arti-sukasem May 21, 2021
6b45113
Updated parameters for mouse right lung
arti-sukasem May 25, 2021
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20 changes: 10 additions & 10 deletions src/scaffoldmaker/annotation/lung_terms.py
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Expand Up @@ -4,30 +4,30 @@

# convention: preferred name, preferred id, followed by any other ids and alternative names
lung_terms = [
("apex of accessory lung", "None"),
("apex of right lung accessory lobe", "ILX:0778119"),
("apex of left lung", "ILX:0778112"),
("apex of right lung", "ILX:0778113"),
("dorsal base of accessory lung", "None"),
("dorsal base of left lung", "None"),
("dorsal base of right lung", "None"),
("dorsal base of right lung accessory lobe", "ILX:0778125"),
("dorsal base of left lung", "ILX:0778126"),
("dorsal base of right lung", "ILX:0778127"),
("horizontal fissure of right lung", "ILX:0746327"),
("laterodorsal tip of middle lobe of right lung", "None"),
("laterodorsal tip of middle lobe of right lung", "ILX:0778124"),
("left lung", "UBERON:0002168", "ILX:0733450"),
("lower lobe of left lung", "UBERON:0008953", "ILX:0735534"),
("lower lobe of right lung", "UBERON:0002171", "ILX:0725712"),
("lung", "UBERON:0002048", "ILX:0726937"),
("middle lobe of right lung", "UBERON:0002174", "ILX:0733737"),
("medial base of left lung", "None"),
("medial base of right lung", "None"),
("medial base of left lung", "ILX:0778120"),
("medial base of right lung", "ILX:0778121"),
("oblique fissure of left lung", "ILX:0778115"),
("oblique fissure of right lung", "ILX:0778114"),
("right lung", "UBERON:0002167", "ILX:0729582"),
("right lung accessory lobe", "UBERON:0004890", "ILX:0728696"),
("upper lobe of left lung", "UBERON:0008952", "ILX:0735339"),
("upper lobe of right lung", "UBERON:0002170", "ILX:0728821"),
("ventral base of accessory lung", "None"),
("ventral base of left lung", "None"),
("ventral base of right lung", "None")
("ventral base of right lung accessory lobe", "ILX:0778123"),
("ventral base of left lung", "ILX:0778118"),
("ventral base of right lung", "ILX:0778122")
]

def get_lung_term(name : str):
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