Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

created lung fissure annotation #135

Merged
merged 6 commits into from
May 11, 2021

Conversation

arti-sukasem
Copy link
Contributor

There are no such terms called oblique and horizontal fissures on SciCrunch. I will request those terms on SciCrunch as we discussed yesterday

This test_lung.py requires humanFiducialPoint branch to run a test for marker points
src/scaffoldmaker/annotation/lung_terms.py Outdated Show resolved Hide resolved
src/scaffoldmaker/meshtypes/meshtype_3d_lung1.py Outdated Show resolved Hide resolved
src/scaffoldmaker/meshtypes/meshtype_3d_lung1.py Outdated Show resolved Hide resolved
tests/test_lung.py Outdated Show resolved Hide resolved
tests/test_lung.py Show resolved Hide resolved
tests/test_lung.py Outdated Show resolved Hide resolved
tests/test_lung.py Outdated Show resolved Hide resolved
Copy link
Member

@rchristie rchristie left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Some small fixes requested.

src/scaffoldmaker/meshtypes/meshtype_3d_lung1.py Outdated Show resolved Hide resolved
Copy link
Member

@rchristie rchristie left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

A tiny fix now.

upperLeftGroup = getAnnotationGroupForTerm(annotationGroups, get_lung_term("upper lobe of left lung"))
lowerLeftGroup = getAnnotationGroupForTerm(annotationGroups, get_lung_term("lower lobe of left lung"))

mesh2d = fm.findMeshByDimension(2)
Copy link
Member

@rchristie rchristie May 11, 2021

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Move this line above if isHuman:
Fails for mouse as mesh2d isn't defined for the right side. Please test mouse runs, check your lung test passes.

Copy link
Member

@rchristie rchristie left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Good thanks!

@rchristie rchristie merged commit 5532f96 into ABI-Software:master May 11, 2021
@arti-sukasem arti-sukasem deleted the human2DAnnotation branch April 13, 2022 22:22
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants