Merge pull request #138 from arti-sukasem/humanFiducialPoint_v2

added marker points for both human and mouse, updated mouse parameter…
ABI-Software · May 13, 2021 · 78b1fe2 · 78b1fe2
2 parents e4ce4f1 + afe6923
commit 78b1fe2
Show file tree

Hide file tree

Showing 3 changed files with 357 additions and 230 deletions.
diff --git a/src/scaffoldmaker/annotation/lung_terms.py b/src/scaffoldmaker/annotation/lung_terms.py
@@ -4,18 +4,30 @@
 
 # convention: preferred name, preferred id, followed by any other ids and alternative names
 lung_terms = [
-    ("horizontal fissure of right lung", "None"),
-    ("lung", "UBERON:0002048", "ILX:0726937"),
+    ("apex of accessory lung", "None"),
+    ("apex of left lung", "ILX:0778112"),
+    ("apex of right lung", "ILX:0778113"),
+    ("dorsal base of accessory lung", "None"),
+    ("dorsal base of left lung", "None"),
+    ("dorsal base of right lung", "None"),
+    ("horizontal fissure of right lung", "ILX:0746327"),
+    ("laterodorsal tip of middle lobe of right lung", "None"),
     ("left lung", "UBERON:0002168", "ILX:0733450"),
-    ("oblique fissure of left lung", "None"),
-    ("oblique fissure of right lung", "None"),
+    ("lower lobe of left lung", "UBERON:0008953", "ILX:0735534"),
+    ("lower lobe of right lung", "UBERON:0002171", "ILX:0725712"),
+    ("lung", "UBERON:0002048", "ILX:0726937"),
+    ("middle lobe of right lung", "UBERON:0002174", "ILX:0733737"),
+    ("medial base of left lung", "None"),
+    ("medial base of right lung", "None"),
+    ("oblique fissure of left lung", "ILX:0778115"),
+    ("oblique fissure of right lung", "ILX:0778114"),
     ("right lung", "UBERON:0002167", "ILX:0729582"),
+    ("right lung accessory lobe", "UBERON:0004890", "ILX:0728696"),
     ("upper lobe of left lung", "UBERON:0008952", "ILX:0735339"),
-    ("lower lobe of left lung", "UBERON:0008953", "ILX:0735534"),
     ("upper lobe of right lung", "UBERON:0002170", "ILX:0728821"),
-    ("middle lobe of right lung", "UBERON:0002174", "ILX:0733737"),
-    ("lower lobe of right lung", "UBERON:0002171", "ILX:0725712"),
-    ("right lung accessory lobe", "UBERON:0004890", "ILX:0728696")
+    ("ventral base of accessory lung", "None"),
+    ("ventral base of left lung", "None"),
+    ("ventral base of right lung", "None")
 ]
 
 def get_lung_term(name : str):