Merge pull request #144 from arti-sukasem/ratMeshLung_v2

Updated mouse parameters and ILX for lung terms
ABI-Software · May 25, 2021 · 5796e3b · 5796e3b
2 parents 0499ddb + 6b45113
commit 5796e3b
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diff --git a/src/scaffoldmaker/annotation/lung_terms.py b/src/scaffoldmaker/annotation/lung_terms.py
@@ -4,30 +4,30 @@
 
 # convention: preferred name, preferred id, followed by any other ids and alternative names
 lung_terms = [
-    ("apex of accessory lung", "None"),
+    ("apex of right lung accessory lobe", "ILX:0778119"),
     ("apex of left lung", "ILX:0778112"),
     ("apex of right lung", "ILX:0778113"),
-    ("dorsal base of accessory lung", "None"),
-    ("dorsal base of left lung", "None"),
-    ("dorsal base of right lung", "None"),
+    ("dorsal base of right lung accessory lobe", "ILX:0778125"),
+    ("dorsal base of left lung", "ILX:0778126"),
+    ("dorsal base of right lung", "ILX:0778127"),
     ("horizontal fissure of right lung", "ILX:0746327"),
-    ("laterodorsal tip of middle lobe of right lung", "None"),
+    ("laterodorsal tip of middle lobe of right lung", "ILX:0778124"),
     ("left lung", "UBERON:0002168", "ILX:0733450"),
     ("lower lobe of left lung", "UBERON:0008953", "ILX:0735534"),
     ("lower lobe of right lung", "UBERON:0002171", "ILX:0725712"),
     ("lung", "UBERON:0002048", "ILX:0726937"),
     ("middle lobe of right lung", "UBERON:0002174", "ILX:0733737"),
-    ("medial base of left lung", "None"),
-    ("medial base of right lung", "None"),
+    ("medial base of left lung", "ILX:0778120"),
+    ("medial base of right lung", "ILX:0778121"),
     ("oblique fissure of left lung", "ILX:0778115"),
     ("oblique fissure of right lung", "ILX:0778114"),
     ("right lung", "UBERON:0002167", "ILX:0729582"),
     ("right lung accessory lobe", "UBERON:0004890", "ILX:0728696"),
     ("upper lobe of left lung", "UBERON:0008952", "ILX:0735339"),
     ("upper lobe of right lung", "UBERON:0002170", "ILX:0728821"),
-    ("ventral base of accessory lung", "None"),
-    ("ventral base of left lung", "None"),
-    ("ventral base of right lung", "None")
+    ("ventral base of right lung accessory lobe", "ILX:0778123"),
+    ("ventral base of left lung", "ILX:0778118"),
+    ("ventral base of right lung", "ILX:0778122")
 ]
 
 def get_lung_term(name : str):