test: [Automatic] Constraints upgrades: imageio, ipykernel, ipython, numpy, pandas, psygnal, pygments, pyinstaller, qtconsole, scipy, sentry-sdk, simpleitk
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WalkthroughThe updates reflect a broad upgrade of package versions across Python 3.8, 3.9, 3.10, and 3.11 environments. These changes likely introduce bug fixes, performance enhancements, and new features, which could affect the behavior of dependent software. Changes
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- requirements/constraints_py3.10.txt (11 hunks)
- requirements/constraints_py3.11.txt (11 hunks)
- requirements/constraints_py3.8.txt (9 hunks)
- requirements/constraints_py3.9.txt (11 hunks)
Additional comments: 40
requirements/constraints_py3.9.txt (10)
23-28:
babelhas been updated. Ensure that this does not affect any localization or internationalization features in your application.32-38:
charset-normalizerhas been updated. This could potentially affect how text is processed in your application, so make sure to test any features that rely on text processing.86-92:
imageiohas been updated. This could potentially affect how images are processed in your application, so make sure to test any features that rely on image processing.111-136: Several packages related to Jupyter and IPython have been updated, including
ipython,jupyter-client, andjupyter-core. If your application uses Jupyter notebooks or IPython, make sure to test these features thoroughly.243-248:
pillowhas been updated. This could potentially affect how images are processed in your application, so make sure to test any features that rely on image processing.313-321:
pyqt6and related packages have been updated. This could potentially affect the GUI of your application, so make sure to test all GUI features thoroughly.388-394:
rpds-pyhas been updated. This could potentially affect data structures used in your application, so make sure to test any features that rely on these data structures.401-407:
sentry-sdkhas been updated. This could potentially affect error reporting in your application, so make sure to test error reporting features thoroughly.475-481:
traitletshas been updated. This could potentially affect configuration management in your application, so make sure to test any features that rely on configuration management.508-514:
wcwidthhas been updated. This could potentially affect how text is displayed in your application, so make sure to test any features that rely on text display.requirements/constraints_py3.8.txt (9)
34-40: The
charset-normalizerpackage has been updated from 3.3.1 to 3.3.2. Ensure that this update does not introduce any breaking changes.86-92: The
imageiopackage has been updated from 2.31.6 to 2.32.0. Ensure that this update does not introduce any breaking changes.120-140: The
jsonschemapackage has been updated from 4.19.1 to 4.19.2 andjupyter-corehas been updated from 5.4.0 to 5.5.0. Ensure that these updates do not introduce any breaking changes.322-330: The
pyqt6package and its related packages have been updated from 6.5.3 to 6.6.0. Ensure that this update does not introduce any breaking changes.376-382: The
qtconsolepackage has been updated from 5.4.4 to 5.5.0. Ensure that this update does not introduce any breaking changes.401-407: The
rpds-pypackage has been updated from 0.10.6 to 0.12.0. Ensure that this update does not introduce any breaking changes.414-420: The
sentry-sdkpackage has been updated from 1.32.0 to 1.34.0. Ensure that this update does not introduce any breaking changes.488-494: The
traitletspackage has been updated from 5.12.0 to 5.13.0. Ensure that this update does not introduce any breaking changes.521-527: The
wcwidthpackage has been updated from 0.2.8 to 0.2.9. Ensure that this update does not introduce any breaking changes.requirements/constraints_py3.11.txt (11)
23-28: The versions of these packages have been updated. Ensure that these updates do not introduce breaking changes or incompatibilities.
32-38: The version of
charset-normalizerhas been updated from 3.3.1 to 3.3.2. Ensure that this update does not introduce breaking changes or incompatibilities.82-88: The version of
imageiohas been updated from 2.31.6 to 2.32.0. Ensure that this update does not introduce breaking changes or incompatibilities.102-127: The versions of these packages have been updated. Ensure that these updates do not introduce breaking changes or incompatibilities.
234-239: The version of
pillowhas been updated from 10.0.1 to 10.0.1. This seems to be a mistake as the version number has not changed. Please verify.304-312: The version of
pyqt6and its related packages have been updated from 6.5.3 to 6.6.0. Ensure that this update does not introduce breaking changes or incompatibilities.354-360: The version of
qtconsolehas been updated from 5.4.4 to 5.5.0. Ensure that this update does not introduce breaking changes or incompatibilities.379-385: The version of
rpds-pyhas been updated from 0.10.6 to 0.12.0. Ensure that this update does not introduce breaking changes or incompatibilities.392-398: The version of
sentry-sdkhas been updated from 1.32.0 to 1.34.0. Ensure that this update does not introduce breaking changes or incompatibilities.459-465: The version of
traitletshas been updated from 5.12.0 to 5.13.0. Ensure that this update does not introduce breaking changes or incompatibilities.491-497: The version of
wcwidthhas been updated from 0.2.8 to 0.2.9. Ensure that this update does not introduce breaking changes or incompatibilities.requirements/constraints_py3.10.txt (10)
23-28:
babelversion is updated. Ensure that this does not introduce any localization or internationalization issues.32-38:
charset-normalizerversion is updated. This is used byrequests, so ensure that it does not introduce any issues with HTTP requests.86-92:
imageioversion is updated. This is used for reading and writing a wide range of image data, including animated images, volumetric data, and scientific formats. Ensure that it does not introduce any issues with image handling.106-131:
ipython,jupyter-core, andjsonschemaversions are updated. These are used for interactive computing and validation of JSON schemas, respectively. Ensure that these updates do not introduce any issues with interactive computing or JSON schema validation.238-243:
pillowversion is updated. This is used for handling images. Ensure that it does not introduce any issues with image handling.308-316: > Note: This review was outside of the patch, so it was mapped to the patch with the greatest overlap. Original lines [308-364]
pyqt6and related packages are updated. These are used for creating the graphical user interface. Ensure that these updates do not introduce any issues with the user interface.
383-389:
rpds-pyversion is updated. This is used byjsonschemaandreferencing. Ensure that it does not introduce any issues with JSON schema validation or referencing.396-402:
sentry-sdkversion is updated. This is used for error tracking and monitoring. Ensure that it does not introduce any issues with error tracking or monitoring.470-476:
traitletsversion is updated. This is used for configuring applications. Ensure that it does not introduce any issues with application configuration.502-508:
wcwidthversion is updated. This is used byprompt-toolkit, which is used byipython. Ensure that it does not introduce any issues with interactive computing.
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imageio, ipython, qtconsole, sentry-sdkimageio, ipython, numpy, pandas, pyinstaller, qtconsole, sentry-sdk, simpleitk
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- requirements/constraints_py3.8.txt
- requirements/constraints_py3.9.txt
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imageio, ipython, numpy, pandas, pyinstaller, qtconsole, sentry-sdk, simpleitkimageio, ipython, numpy, pandas, psygnal, pygments, pyinstaller, qtconsole, scipy, sentry-sdk, simpleitk
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- requirements/constraints_py3.10.txt (16 hunks)
- requirements/constraints_py3.11.txt (16 hunks)
- requirements/constraints_py3.8.txt (17 hunks)
- requirements/constraints_py3.9.txt (16 hunks)
Files skipped from review due to trivial changes (1)
- requirements/constraints_py3.10.txt
Additional comments: 49
requirements/constraints_py3.9.txt (16)
23-54: The update of
certifiandcharset-normalizerversions seems consistent and should not cause any issues if they are backward compatible. However, the update ofdaskto2023.11.0should be checked for compatibility with the rest of the codebase, as major version updates can sometimes introduce breaking changes.86-92: The update of
imageioto2.33.0is noted. Ensure that this version is compatible with the image processing functionalities used in the project, asimageiois a critical library for handling image files.111-136: The update of
ipythonto8.17.2,jsonschemato4.20.0,jupyter-clientto8.6.0, andjupyter-coreto5.5.0are significant and should be tested thoroughly to ensure that they do not introduce any regressions, especially in interactive environments and data validation processes.189-195: The update of
numpyto1.26.2is crucial as it is a foundational package for numerical computations. It is important to verify that all numerical operations and dependencies that rely onnumpyare still functioning correctly after this update.229-235: The update of
pandasto2.1.3should be carefully reviewed to ensure that all data manipulation and analysis functionalities are still working as expected, aspandasis a core library for handling data frames.243-270: The update of
pillowto10.1.0,platformdirsto4.0.0, andpsygnalto0.9.5should be checked for compatibility with image processing and signal handling functionalities within the project.284-290: The update of
pygmentsto2.17.1should be checked to ensure that syntax highlighting and code formatting functionalities are not affected.296-299: The update of
pyinstallerto6.2.0andpyinstaller-hooks-contribto2023.10should be verified to ensure that the application packaging process is still working correctly and that all necessary hooks are included.313-321: The update of
pyqt6and related packages to6.6.0and13.6.0respectively should be carefully tested to ensure that the GUI components of the project are functioning correctly with these new versions.363-369: The update of
qtconsoleto5.5.1should be tested to ensure that the console functionality within the application is not affected.376-382: The update of
referencingto0.31.0should be verified to ensure that any functionality related to JSON schema referencing is still working as intended.386-407: The update of
richto13.7.0,rpds-pyto0.13.0, andsentry-sdkto1.35.0should be checked for compatibility with the project's logging, data structure handling, and error reporting functionalities.412-418: The update of
simpleitkto2.3.1should be verified to ensure that medical image processing functionalities are not affected.475-481: The update of
traitletsto5.13.0should be checked to ensure that configuration management and event handling in the application are still functioning correctly.500-505: The update of
urllib3to2.1.0should be verified to ensure that all HTTP communications within the application are still secure and functioning correctly.508-516: The update of
wcwidthto0.2.10andwraptto1.16.0should be checked for compatibility with the project's text processing and decorator functionalities.requirements/constraints_py3.8.txt (17)
29-47: The update of
certifito2023.11.17andcharset-normalizerto3.3.2is consistent across all Python versions as mentioned in the summary. This is good for maintaining consistency in dependency management. However, ensure that these updates do not introduce any compatibility issues with the rest of the codebase or other dependencies.86-92: The update of
imageioto2.33.0is consistent with the summary. Ensure that this version ofimageiois compatible with the current codebase, especially ifimageiois used extensively for image processing tasks.102-108: The update of
importlib-resourcesto6.1.1is a minor version bump. Verify that this update does not affect any dynamic resource loading that may be happening in the codebase.120-140: The updates to
ipythonto8.12.3,jsonschemato4.20.0,jupyter-clientto8.6.0, andjupyter-coreto5.5.0are consistent with the summary. Ensure that these updates are tested for compatibility with the interactive environments and data validation processes used in the project.250-256: The update of
pillowto10.1.0is consistent with the summary. Sincepillowis a critical library for image manipulation, ensure that this update does not break any image processing functionality in the project.259-279: The updates to
platformdirsto4.0.0,prompt-toolkitto3.0.41, andpsygnalto0.9.5are consistent with the summary. Verify that these updates do not introduce any breaking changes, especiallyprompt-toolkitwhich is often used for command-line interfaces and could affect the user experience if there are compatibility issues.293-299: The update of
pygmentsto2.17.1is consistent with the summary. Verify that syntax highlighting and code formatting features are still functioning correctly after this update.305-308: The update of
pyinstallerto6.2.0is consistent with the summary. Ensure that the application's packaging process is still working as expected after this update, aspyinstalleris critical for creating standalone executables.322-330: The updates to
pyqt6and related packages are consistent with the summary. These updates are important for GUI-related functionality, so thorough testing is required to ensure that the graphical interface of the application remains stable and performs well.377-382: The update of
qtconsoleto5.5.1is consistent with the summary. Verify that the console functionality within the application, if utilized, is still working as expected after this update.392-395: The update of
referencingto0.31.0is consistent with the summary. Sincereferencingis related tojsonschema, ensure that the data validation and referencing mechanisms are still functioning correctly.402-407: The update of
richto13.7.0is consistent with the summary. Verify that the console rendering and logging functionalities that may userichare still working as expected after this update.417-420: The update of
sentry-sdkto1.35.0is consistent with the summary. Ensure that error reporting and logging to Sentry are still functioning correctly after this update.428-431: The update of
simpleitkto2.3.1is consistent with the summary. Sincesimpleitkis used for medical image analysis, ensure that the update does not affect any image processing or analysis functionality.488-494: The update of
traitletsto5.13.0is consistent with the summary. Verify that this update does not affect configuration management or event handling in the application.515-518: The update of
urllib3to2.1.0is consistent with the summary. Sinceurllib3is a fundamental library for HTTP communication, ensure that all network requests and related functionality are still working as expected after this update.524-529: The update of
wcwidthto0.2.10is consistent with the summary. Verify that this update does not affect text rendering in terminal interfaces, aswcwidthis used to determine the printable width of characters.requirements/constraints_py3.11.txt (16)
23-54: The updates to the package versions in this hunk are consistent with the summary provided. It's important to ensure that the updated versions do not introduce any breaking changes or incompatibilities with the existing codebase. It would be advisable to run a full suite of tests to verify that the updates do not cause any regressions.
82-88: The update to
imageiofrom 2.31.6 to 2.33.0 should be checked for any deprecated functions or changes in the API that might affect the codebase. Running tests that involve image processing would be a good way to ensure compatibility.102-127: The updates to
ipython,jupyter-client, andjupyter-coreare significant as they are core components of interactive computing environments. It's crucial to verify that the new versions work well with the project's Jupyter notebooks or any other interactive environments used.180-186: The update to
numpyfrom 1.26.1 to 1.26.2 is a minor version bump. However, given the central role ofnumpyin scientific computing, it's important to ensure that this update does not affect any numerical computations or data processing pipelines.220-226: The update to
pandasfrom 2.1.2 to 2.1.3 is also a minor version bump. Similar tonumpy, it's important to verify that the update does not introduce any issues with data manipulation or analysis functionalities.234-261: The updates to
pillow,platformdirs, andpsygnalshould be checked for compatibility with the project's image handling and file system interactions. Special attention should be given topillowdue to its extensive use in image processing.275-281: The update to
pygmentsfrom 2.16.1 to 2.17.1 should be checked for any changes in syntax highlighting or code formatting features that might be used in documentation or in the project's user interface.284-290: The update to
pyinstallerfrom 6.1.0 to 6.2.0 is important for the project's packaging and distribution. It's essential to ensure that the new version does not affect the build process or the generation of executables.304-312: The updates to
pyqt6and related packages are significant as they are likely to affect the project's user interface. Thorough testing of the UI should be conducted to ensure that all elements are functioning as expected after the update.354-360: The update to
qtconsolefrom 5.4.4 to 5.5.1 should be checked for any changes in the console interface used by the project. If the project relies on custom console widgets or integration, these should be tested to ensure they work with the new version.367-373: The update to
referencingfrom 0.30.2 to 0.31.0 should be checked for any changes in the way references are handled within the project, especially if the project uses JSON schema references extensively.377-398: The updates to
richandsentry-sdkare important for the project's logging and error reporting. It's crucial to verify that the logging output and error reporting functionalities are not affected by these updates.403-409: The update to
simpleitkfrom 2.3.0 to 2.3.1 should be checked for compatibility with the project's medical image processing functionalities. Any changes in the API or behavior should be thoroughly tested.459-465: The update to
traitletsfrom 5.12.0 to 5.13.0 should be checked for any changes in configuration management or component interaction patterns, astraitletsis often used for these purposes in Jupyter and IPython-related projects.482-488: The update to
urllib3from 2.0.7 to 2.1.0 is important for network communications. It's essential to ensure that the update does not affect any HTTP requests or other network interactions within the project.491-499: The update to
wcwidthfrom 0.2.8 to 0.2.10 should be checked for any changes in the way terminal output is formatted, aswcwidthis used to determine the printable width of characters. Additionally, the update towraptfrom 1.12.1 to 1.16.0 should be checked for compatibility with any decorators used in the project.
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- requirements/constraints_py3.10.txt (18 hunks)
- requirements/constraints_py3.11.txt (17 hunks)
- requirements/constraints_py3.8.txt (19 hunks)
- requirements/constraints_py3.9.txt (18 hunks)
Files skipped from review due to trivial changes (1)
- requirements/constraints_py3.10.txt
Additional comments: 41
requirements/constraints_py3.11.txt (17)
23-54: The updates to package versions in the requirements file appear to be part of routine maintenance. Ensure that the updated versions are tested for compatibility with the project.
78-88: The version updates for
idnaandimageioare noted. It's important to verify that these updates do not introduce any compatibility issues with the existing codebase.102-127: The updates to
ipython,jupyter-client, andjupyter-coreare significant as they are core components of interactive computing in Python. Ensure thorough testing to confirm that the interactive environments function as expected after these updates.180-186: The update to
numpyis critical due to its foundational role in numerical computing in Python. Compatibility with other scientific packages that depend onnumpyshould be verified.220-226: The update to
pandasis important for data manipulation tasks. Verify that the new version does not affect any data processing workflows in the project.232-261: The updates to
pillow,platformdirs, andpsygnalshould be checked for compatibility, especially sincepillowis a widely used imaging library and changes could impact image processing functionality.275-281: The update to
pygmentsis noted. Since it's used for syntax highlighting, ensure that documentation or UI components that rely on this functionality are still displaying correctly.287-290: The update to
pyinstalleris crucial as it affects the packaging of the application. Verify that the application builds and runs correctly with the new version.307-312: The updates to
pyqt6and related packages are significant due to their role in the GUI of the application. Ensure that the GUI components work as expected with these new versions.357-360: The update to
qtconsoleis important for projects that use Jupyter environments. Testing should confirm that the console interactions remain stable.370-373: The update to
referencingshould be verified to ensure that JSON schema validations, if used in the project, are still functioning correctly.380-398: The updates to
rich,rpds-py, andsentry-sdkare noted. Sincerichis used for rendering rich text and formatting in the terminal, andsentry-sdkis used for error tracking, their functionality should be tested.406-409: The update to
simpleitkis relevant for projects involving medical image processing. Ensure that image processing pipelines are unaffected by this update.462-465: The update to
traitletsis important for configuration management in IPython and Jupyter. Verify that configurations and command-line interfaces are working as intended.485-488: The update to
urllib3is critical as it's widely used for HTTP client functionality. Ensure that network communications and data fetching are functioning correctly after the update.494-499: The update to
wcwidthandwraptshould be verified, especially sincewcwidthaffects the way text is displayed in terminals andwraptis used for function wrappers and decorators.506-507: The update to
setuptoolsis crucial for the build and distribution process of the project. Verify that the project's setup process works correctly with the new version.requirements/constraints_py3.8.txt (19)
29-47: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
66-72: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
82-92: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
102-108: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
120-140: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
246-256: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
259-279: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
293-299: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
305-308: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
322-330: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
376-382: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
389-395: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
399-407: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
414-420: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
425-431: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
488-494: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
512-518: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
521-529: The updates to package versions in this hunk are part of routine maintenance. Ensure that the updated versions are tested for compatibility and do not introduce any breaking changes or known vulnerabilities.
535-539: The update to
setuptoolsin this hunk is part of routine maintenance. Ensure that the updated version is tested for compatibility and does not introduce any breaking changes or known vulnerabilities.requirements/constraints_py3.9.txt (5)
23-54: The updates to the package versions in
constraints_py3.9.txtappear to be minor version updates or patches. Ensure that the updated packages are tested for compatibility with the existing codebase.111-136: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [64-125]
The package version updates continue throughout the file. As with the previous hunk, ensure compatibility with the existing codebase through thorough testing.
- 111-136: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [82-263]
The pattern of updating package versions to newer minor or patch versions is consistent throughout the file. Continue to verify compatibility and functionality with the existing codebase.
- 386-407: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [284-513]
The updates to package versions are consistent with the rest of the file, focusing on minor and patch version increments. Ensure that these updates do not introduce any breaking changes by conducting appropriate testing.
- 520-524: The update to
setuptoolsis noteworthy due to its central role in Python package management. Verify that this update does not affect build or deployment processes.
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imageio, ipython, numpy, pandas, psygnal, pygments, pyinstaller, qtconsole, scipy, sentry-sdk, simpleitkimageio, ipykernel, ipython, numpy, pandas, psygnal, pygments, pyinstaller, qtconsole, scipy, sentry-sdk, simpleitk
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Actionable comments generated: 4
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Files selected for processing (4)
- requirements/constraints_py3.10.txt (18 hunks)
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- requirements/constraints_py3.8.txt (18 hunks)
- requirements/constraints_py3.9.txt (19 hunks)
Additional comments: 62
requirements/constraints_py3.10.txt (18)
23-54: The updates to
certifi,charset-normalizer,comm, anddaskalign with the PR's objective to update dependencies and are correctly reflected in the constraints file.64-70: The update to
exceptiongroupis consistent with the PR's objective and is correctly reflected in the constraints file.74-92: The updates to
fsspec,idna, andimageioare consistent with the PR's objective to update dependencies and are correctly reflected in the constraints file.95-131: The updates to
importlib-metadata,ipykernel,ipython,jupyter-client, andjupyter-coreare consistent with the PR's objective to update dependencies and are correctly reflected in the constraints file.184-190: The update to
numpyis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.224-230: The update to
pandasis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.236-265: The updates to
partsegcore-compiled-backend,pexpect,pillow,platformdirs, andpsygnalare consistent with the PR's objective to update dependencies and are correctly reflected in the constraints file.279-285: The update to
pygmentsis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.288-294: The update to
pyinstalleris consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.308-316: The updates to
pyqt6,pyqt6-qt6, andpyqt6-sipare consistent with the PR's objective to update dependencies and are correctly reflected in the constraints file.358-364: The update to
qtconsoleis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.371-377: The update to
referencingis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.384-402: The updates to
rich,rpds-py,scikit-image,scipy, andsentry-sdkare consistent with the PR's objective to update dependencies and are correctly reflected in the constraints file.410-413: The update to
simpleitkis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.465-476: The update to
tornadoandtraitletsis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.494-499: The update to
urllib3is consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.505-510: The updates to
wcwidthandwraptare consistent with the PR's objective to update dependencies and are correctly reflected in the constraints file.517-518: The update to
setuptoolsis consistent with the PR's objective to update dependencies and is correctly reflected in the constraints file.requirements/constraints_py3.11.txt (17)
23-54:
The updates tocertifi,charset-normalizer,comm, anddaskalign with the PR's objective to update dependencies to newer versions.70-88:
The updates tofsspecandimageioare consistent with the PR's goal of keeping dependencies current.94-127:
The updates toimportlib-metadata,ipykernel,ipython,jupyter-client, andjupyter-coreare in line with the PR's objective to update dependencies.180-186:
The update tonumpyversion is consistent with the PR's goal of updating dependencies.232-261: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [220-246]
The update to
pandasversion is in line with the PR's objective to keep the project's dependencies up-to-date.
232-261:
The updates topexpect,pillow,platformdirs, andpsygnalalign with the PR's goal of updating dependencies.275-281:
The update topygmentsversion is consistent with the PR's objective to maintain current dependencies.287-290:
The update topyinstallerversion aligns with the PR's goal of updating dependencies.304-312:
The updates topyqt6,pyqt6-qt6, andpyqt6-sipare consistent with the PR's objective to update dependencies.354-360:
The update toqtconsoleversion is in line with the PR's objective to keep dependencies up-to-date.370-373:
The update toreferencingversion aligns with the PR's goal of updating dependencies.377-398:
The updates torich,rpds-py,scipy, andsentry-sdkare consistent with the PR's objective to maintain current dependencies.403-409:
The update tosimpleitkversion is in line with the PR's objective to update dependencies.451-465:
The updates totornadoandtraitletsalign with the PR's goal of keeping dependencies current.482-488:
The update tourllib3version is consistent with the PR's objective to update dependencies.491-497:
The updates towcwidthandwraptare in line with the PR's objective to maintain current dependencies.503-507:
The update tosetuptoolsversion aligns with the PR's goal of updating dependencies.requirements/constraints_py3.8.txt (18)
29-47:
The updates tocertifi,charset-normalizer, andcommversions are consistent with the PR's objective to keep dependencies current.66-89:
The updates tofsspec,idna, andimageioversions align with the PR's goal of updating dependencies.95-116:
The updates toimportlib-metadata,importlib-resources, andipykernelversions are in accordance with the PR's objective to maintain up-to-date dependencies.120-140:
The updates tojsonschema,jsonschema-specifications,jupyter-client, andjupyter-coreversions are appropriate for the PR's aim of dependency version management.246-256:
The update topillowversion is consistent with the PR's goal of keeping dependencies up-to-date.259-279:
The updates toprompt-toolkitandpsygnalversions align with the PR's objective of updating dependencies.293-299:
The update topygmentsversion is in line with the PR's goal of maintaining current dependencies.305-308:
The update topyinstallerversion is consistent with the PR's objective to update dependencies.322-330:
The updates topyqt6,pyqt6-qt6, andpyqt6-sipversions are appropriate for the PR's aim of keeping dependencies current.376-382:
The update toqtconsoleversion aligns with the PR's goal of updating dependencies.389-395:
The update toreferencingversion is consistent with the PR's objective to maintain up-to-date dependencies.399-407:
The updates torichandrpds-pyversions are in line with the PR's goal of updating dependencies.414-420:
The update tosentry-sdkversion aligns with the PR's objective of keeping dependencies current.425-431:
The update tosimpleitkversion is appropriate for the PR's aim of updating dependencies.480-494:
The update totornadoversion is consistent with the PR's goal of maintaining up-to-date dependencies.512-518:
The update tourllib3version aligns with the PR's objective of updating dependencies.521-527:
The updates towcwidthandwraptversions are in line with the PR's goal of keeping dependencies current.535-539:
The update tosetuptoolsversion is consistent with the PR's objective to update dependencies and ensure compatibility across different Python versions.requirements/constraints_py3.9.txt (9)
98-101: The version
7.0.0forimportlib-metadatais correctly updated and follows the semantic versioning format.313-321: The updates to
pyqt5-sip,pyqt6,pyqt6-qt6, andpyqt6-sipare consistent with the PR's objective to update dependencies and do not show any apparent issues.363-369: The update to
qtconsoleversion5.5.1is consistent with the PR's objective to update dependencies and follows the semantic versioning format.379-382: The package
referencingis updated to version0.31.1. Ensure that this version is correct and compatible with thejsonschemaandjsonschema-specificationspackages it is associated with.415-416: The update to
simpleitkversion2.3.1is consistent with the PR's objective to update dependencies and follows the semantic versioning format.470-473: The update to
tornadoversion6.4is consistent with the PR's objective to update dependencies and follows the semantic versioning format.502-505: The update to
urllib3version2.1.0is consistent with the PR's objective to update dependencies and follows the semantic versioning format.511-513: The update to
wcwidthversion0.2.12is consistent with the PR's objective to update dependencies and follows the semantic versioning format.523-524: The update to
setuptoolsversion69.0.2is consistent with the PR's objective to update dependencies and follows the semantic versioning format.
| # referencing | ||
| babel==2.13.1 | ||
| # via sphinx | ||
| backcall==0.2.0 | ||
| # via ipython | ||
| build==1.0.3 | ||
| # via npe2 | ||
| cachey==0.2.1 | ||
| # via napari | ||
| certifi==2023.7.22 | ||
| certifi==2023.11.17 | ||
| # via | ||
| # napari | ||
| # requests | ||
| # sentry-sdk | ||
| charset-normalizer==3.3.1 | ||
| charset-normalizer==3.3.2 | ||
| # via requests | ||
| click==8.1.7 | ||
| # via | ||
| # dask | ||
| # typer | ||
| cloudpickle==3.0.0 | ||
| # via dask | ||
| comm==0.1.4 | ||
| comm==0.2.0 | ||
| # via ipykernel | ||
| coverage==7.3.2 | ||
| # via | ||
| # coverage | ||
| # pytest-cov | ||
| czifile==2019.7.2 | ||
| # via PartSeg (setup.cfg) | ||
| dask==2023.10.1 | ||
| dask==2023.12.0 | ||
| # via | ||
| # dask | ||
| # napari |
There was a problem hiding this comment.
The update to dask version 2023.12.0 seems to be a future version considering the current date is December 2023. Please verify that this is the correct version and not a typo or placeholder.
| imagecodecs==2023.9.18 | ||
| # via PartSeg (setup.cfg) | ||
| imageio==2.31.6 | ||
| imageio==2.33.0 | ||
| # via | ||
| # -r requirements/version_denylist.txt | ||
| # PartSeg (setup.cfg) |
There was a problem hiding this comment.
The version 2023.9.18 for imagecodecs seems to be a future version. Please check if this is the intended version.
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Actionable comments generated: 4
Configuration used: CodeRabbit UI
Files selected for processing (4)
- requirements/constraints_py3.10.txt (18 hunks)
- requirements/constraints_py3.11.txt (17 hunks)
- requirements/constraints_py3.8.txt (18 hunks)
- requirements/constraints_py3.9.txt (19 hunks)
Files skipped from review as they are similar to previous changes (1)
- requirements/constraints_py3.8.txt
Additional comments: 37
requirements/constraints_py3.10.txt (18)
23-54: The updates to package versions in this hunk are consistent with the PR's objective to keep dependencies current. Ensure that these updates do not introduce compatibility issues with the PartSeg project.
64-70: The addition of
exceptiongroupis consistent with the PR's objective. Verify that this new dependency is compatible with the existing codebase and does not introduce any breaking changes.74-92: The updates to package versions in this hunk are consistent with the PR's objective. Ensure that these updates do not introduce compatibility issues with the PartSeg project.
95-131: The updates to package versions in this hunk are consistent with the PR's objective. Ensure that these updates do not introduce compatibility issues with the PartSeg project.
184-190: The update to
numpyversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.224-230: The update to
pandasversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.236-265: The updates to package versions in this hunk are consistent with the PR's objective. Ensure that these updates do not introduce compatibility issues with the PartSeg project.
279-285: The update to
pygmentsversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.288-294: The update to
pyinstallerversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.308-316: The updates to
pyqt6and related packages are consistent with the PR's objective. Ensure that these updates do not introduce compatibility issues with the PartSeg project.358-364: The update to
qtconsoleversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.371-377: The addition of
referencingis consistent with the PR's objective. Verify that this new dependency is compatible with the existing codebase and does not introduce any breaking changes.381-402: The updates to package versions in this hunk are consistent with the PR's objective. Ensure that these updates do not introduce compatibility issues with the PartSeg project.
407-413: The update to
simpleitkversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.462-476: The update to
tornadoversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.493-499: The update to
urllib3version is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.502-510: The updates to package versions in this hunk are consistent with the PR's objective. Ensure that these updates do not introduce compatibility issues with the PartSeg project.
514-518: The update to
setuptoolsversion is consistent with the PR's objective. Ensure that this update does not introduce compatibility issues with the PartSeg project.requirements/constraints_py3.11.txt (17)
23-54:
The updates tocertifi,charset-normalizer,comm, anddaskalign with the PR's objective to update package versions.70-88:
The updates tofsspecandimageioare consistent with the PR's objective to keep dependencies current.94-127:
The updates toimportlib-metadata,ipykernel,ipython,jupyter-client, andjupyter-coreare in line with the PR's goal of updating dependencies.180-186:
The update tonumpyversion is consistent with the PR's objective of maintaining up-to-date dependencies.220-226:
The update topandasversion is in line with the PR's goal of updating dependencies.232-261:
The updates topexpect,pillow,platformdirs, andpsygnalalign with the PR's objective to update package versions.275-281:
The update topygmentsversion is consistent with the PR's objective of maintaining up-to-date dependencies.287-290:
The update topyinstallerversion is in line with the PR's goal of updating dependencies.304-312:
The updates topyqt6,pyqt6-qt6, andpyqt6-sipare consistent with the PR's objective to keep dependencies current.354-360:
The update toqtconsoleversion is in line with the PR's goal of updating dependencies.367-373:
The update toreferencingversion is consistent with the PR's objective of maintaining up-to-date dependencies.377-398:
The updates torich,rpds-py,scikit-image,scipy, andsentry-sdkalign with the PR's objective to update package versions.403-409:
The update tosimpleitkversion is in line with the PR's goal of updating dependencies.451-465:
The updates totornadoandtraitletsare consistent with the PR's objective to keep dependencies current.482-488:
The update tourllib3version is in line with the PR's goal of updating dependencies.491-499:
The updates towcwidthandwraptalign with the PR's objective to update package versions.503-507:
The update tosetuptoolsversion is consistent with the PR's objective of maintaining up-to-date dependencies.requirements/constraints_py3.9.txt (2)
23-26: The package
referencingis mentioned in the comment forattrsbut it is not present in the list of dependencies. This could be an error or an outdated comment. Please verify.520-524: The
setuptoolspackage is listed as unsafe in the requirements file, yet it is included with a specific version. Ensure that includingsetuptoolswith a version number is intentional and safe for the project's dependency management.
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Review Status
Actionable comments generated: 4
Configuration used: CodeRabbit UI
Files selected for processing (4)
- requirements/constraints_py3.10.txt (18 hunks)
- requirements/constraints_py3.11.txt (17 hunks)
- requirements/constraints_py3.8.txt (18 hunks)
- requirements/constraints_py3.9.txt (19 hunks)
Files skipped from review as they are similar to previous changes (1)
- requirements/constraints_py3.8.txt
Additional comments: 41
requirements/constraints_py3.10.txt (18)
23-54:
The updates tocertifi,charset-normalizer,comm, anddaskalign with the PR's objective to update dependencies to newer versions.64-70:
The update toexceptiongroupis consistent with the PR's objective and is correctly reflected in the hunk.74-92:
The updates tofsspec,idna, andimageioare in line with the PR's objective to keep dependencies current.95-131:
The updates toimportlib-metadata,ipykernel,ipython,jupyter-client, andjupyter-coreare consistent with the PR's objective to update dependencies.184-190:
The update tonumpyis consistent with the PR's objective to update dependencies to newer versions.224-230:
The update topandasis consistent with the PR's objective to update dependencies to newer versions.236-265:
The updates topartsegcore-compiled-backend,pexpect,pillow,platformdirs, andpsygnalare consistent with the PR's objective to update dependencies.279-285:
The update topygmentsis consistent with the PR's objective to update dependencies to newer versions.288-294:
The update topyinstalleris consistent with the PR's objective to update dependencies to newer versions.308-316:
The updates topyqt6,pyqt6-qt6, andpyqt6-sipare consistent with the PR's objective to update dependencies to newer versions.358-364:
The update toqtconsoleis consistent with the PR's objective to update dependencies to newer versions.371-377:
The update toreferencingis consistent with the PR's objective to update dependencies to newer versions.381-402:
The updates torich,rpds-py,scipy, andsentry-sdkare consistent with the PR's objective to update dependencies.407-413:
The update tosimpleitkis consistent with the PR's objective to update dependencies to newer versions.462-476:
The update totornadois consistent with the PR's objective to update dependencies to newer versions.493-499:
The update tourllib3is consistent with the PR's objective to update dependencies to newer versions.502-510:
The updates tovispy,wcwidth, andwraptare consistent with the PR's objective to update dependencies.514-518:
The update tosetuptoolsis consistent with the PR's objective to update dependencies to newer versions.requirements/constraints_py3.11.txt (4)
304-306: The summary mentions an update to
pyqt5-sip, but there is no such update in theconstraints_py3.11.txtfile. Please verify if this was an oversight in the summary or if the update topyqt5-sipis missing from the file.43-44: The summary mentions an update to
comm, which is correctly reflected in the hunk.91-127: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [23-506]
The summary mentions an update to
exceptiongroup, but this package is not present in theconstraints_py3.11.txtfile. Please verify if this was an oversight in the summary or if the update toexceptiongroupis missing from the file.
- 91-127: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [30-507]
The updates to
pillow,numpy,scipy,imageio,requests,urllib3,charset-normalizer,idna,certifi,pyinstaller,rich,prompt-toolkit,platformdirs,pygments,ipykernel,ipython,jupyter-client,jupyter-core,importlib-metadata,tornado,traitlets,wrapt,simpleitk,sentry-sdk,rpds-py,referencing,qtconsole,pyzmq,pyqt6-sip,pyqt6-qt6,pyqt6,fsspec,dask, andcommare correctly reflected in theconstraints_py3.11.txtfile as per the PR objectives and the summary.requirements/constraints_py3.9.txt (19)
23-54: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
74-92: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [64-101]
The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
74-92: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
95-101: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
106-136: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
189-195: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
229-235: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
241-270: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
284-290: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
293-299: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
313-321: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
363-369: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
376-382: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
386-407: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
412-418: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
467-481: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
499-505: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
508-516: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
520-524: The updates to package versions in this hunk are consistent with the PR objectives to keep dependencies current.
| dask==2023.12.0 | ||
| # via | ||
| # dask | ||
| # napari |
There was a problem hiding this comment.
The version 2023.12.0 for dask is flagged as a future version. Please confirm the accuracy of this version number.
| fsspec==2023.12.0 | ||
| # via dask |
There was a problem hiding this comment.
The version 2023.12.0 for fsspec also appears to be a future version. Please confirm the accuracy of this version number.
| imagecodecs==2023.9.18 | ||
| # via PartSeg (setup.cfg) |
There was a problem hiding this comment.
The version 2023.9.18 for imagecodecs seems to be a future version. Please check if this is the intended version.
| pyinstaller-hooks-contrib==2023.10 | ||
| # via pyinstaller |
There was a problem hiding this comment.
The package pyinstaller-hooks-contrib is updated to version 2023.10, which seems to be a future version. Please confirm this version number.
This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.
The updated packages are:
Summary by CodeRabbit
Documentation
Chores
Bug Fixes