Skip to content

Commit

Permalink
test: [Automatic] Constraints upgrades: imageio, magicgui, `xlsxw…
Browse files Browse the repository at this point in the history
…riter` (#1030)

This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.

The updated packages are:

 * charset-normalizer
 * cloudpickle
 * fsspec
 * imageio
 * magicgui
 * napari-console
 * networkx
 * npe2
 * pillow
 * pyconify
 * urllib3
 * xlsxwriter
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->


### Summary by CodeRabbit

- **Update**: Upgraded various package versions across Python 3.8, 3.9,
3.10, and 3.11 environments, enhancing performance and introducing
potential new features. This includes updates to `charset-normalizer`,
`cloudpickle`, `fsspec`, `imageio`, `magicgui`, `napari-console`,
`networkx`, `npe2`, `pillow`, `pyside6`, `requests`, `shiboken6`,
`urllib3`, and `xlsxwriter`.
- **New Feature**: Added `pyconify` package to Python 3.11 and 3.8
environments, expanding the toolset available for users.
- **Update**: Adjusted versions of key dependencies like `numpy`,
`scipy`, `matplotlib`, `pandas`, `dask`, `scikit-image`, and `napari` to
ensure compatibility and optimal performance.

Please note, these changes may alter the functionality and compatibility
of the software. Users are encouraged to review their workflows in light
of these updates.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Co-authored-by: Czaki <[email protected]>
  • Loading branch information
Czaki and Czaki authored Oct 23, 2023
1 parent 42b81cc commit a6199f9
Show file tree
Hide file tree
Showing 4 changed files with 63 additions and 55 deletions.
34 changes: 18 additions & 16 deletions requirements/constraints_py3.10.txt
Original file line number Diff line number Diff line change
Expand Up @@ -34,13 +34,13 @@ certifi==2023.7.22
# napari
# requests
# sentry-sdk
charset-normalizer==3.3.0
charset-normalizer==3.3.1
# via requests
click==8.1.7
# via
# dask
# typer
cloudpickle==2.2.1
cloudpickle==3.0.0
# via dask
comm==0.1.4
# via ipykernel
Expand Down Expand Up @@ -76,7 +76,7 @@ fonticon-fontawesome6==6.4.0
# via PartSeg (setup.cfg)
freetype-py==2.4.0
# via vispy
fsspec==2023.9.2
fsspec==2023.10.0
# via dask
h5py==3.10.0
# via PartSeg (setup.cfg)
Expand All @@ -88,7 +88,7 @@ idna==3.4
# via requests
imagecodecs==2023.9.18
# via PartSeg (setup.cfg)
imageio==2.31.5
imageio==2.31.6
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
Expand Down Expand Up @@ -148,7 +148,7 @@ locket==1.0.0
# via partd
lxml==4.9.3
# via PartSeg (setup.cfg)
magicgui==0.7.3
magicgui==0.8.0
# via
# PartSeg (setup.cfg)
# napari
Expand All @@ -170,22 +170,21 @@ mypy-extensions==1.0.0
# via psygnal
napari==0.4.18
# via PartSeg (setup.cfg)
napari-console==0.0.8
napari-console==0.0.9
# via napari
napari-plugin-engine==0.2.0
# via
# napari
# napari-console
# napari-svg
napari-svg==0.1.10
# via napari
nest-asyncio==1.5.8
# via ipykernel
networkx==3.1
networkx==3.2
# via scikit-image
nme==0.1.8
# via PartSeg (setup.cfg)
npe2==0.7.2
npe2==0.7.3
# via
# -r requirements/version_denylist.txt
# napari
Expand Down Expand Up @@ -245,7 +244,7 @@ pexpect==4.8.0
# via ipython
pickleshare==0.7.5
# via ipython
pillow==10.1.0
pillow==10.0.1
# via
# imageio
# napari
Expand Down Expand Up @@ -277,6 +276,8 @@ ptyprocess==0.7.0
# via pexpect
pure-eval==0.2.2
# via stack-data
pyconify==0.1.5
# via superqt
pydantic==1.10.13
# via
# -r requirements/version_denylist.txt
Expand Down Expand Up @@ -323,13 +324,13 @@ pyside2==5.15.2.1
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
pyside6==6.5.3 ; python_version >= "3.10"
pyside6==6.6.0 ; python_version >= "3.10"
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
pyside6-addons==6.5.3
pyside6-addons==6.6.0
# via pyside6
pyside6-essentials==6.5.3
pyside6-essentials==6.6.0
# via
# pyside6
# pyside6-addons
Expand Down Expand Up @@ -384,6 +385,7 @@ requests==2.31.0
# via
# PartSeg (setup.cfg)
# pooch
# pyconify
# sphinx
rich==13.6.0
# via npe2
Expand All @@ -406,7 +408,7 @@ sentry-sdk==1.32.0
# PartSeg (setup.cfg)
shiboken2==5.15.2.1
# via pyside2
shiboken6==6.5.3
shiboken6==6.6.0
# via
# pyside6
# pyside6-addons
Expand Down Expand Up @@ -497,7 +499,7 @@ typing-extensions==4.8.0
# typer
tzdata==2023.3
# via pandas
urllib3==2.0.6
urllib3==2.0.7
# via
# requests
# sentry-sdk
Expand All @@ -512,7 +514,7 @@ wrapt==1.15.0
# via napari
xlrd==2.0.1
# via PartSeg (setup.cfg)
xlsxwriter==3.1.8
xlsxwriter==3.1.9
# via PartSeg (setup.cfg)
zipp==3.17.0
# via importlib-metadata
Expand Down
34 changes: 18 additions & 16 deletions requirements/constraints_py3.11.txt
Original file line number Diff line number Diff line change
Expand Up @@ -34,13 +34,13 @@ certifi==2023.7.22
# napari
# requests
# sentry-sdk
charset-normalizer==3.3.0
charset-normalizer==3.3.1
# via requests
click==8.1.7
# via
# dask
# typer
cloudpickle==2.2.1
cloudpickle==3.0.0
# via dask
comm==0.1.4
# via ipykernel
Expand Down Expand Up @@ -72,7 +72,7 @@ fonticon-fontawesome6==6.4.0
# via PartSeg (setup.cfg)
freetype-py==2.4.0
# via vispy
fsspec==2023.9.2
fsspec==2023.10.0
# via dask
h5py==3.10.0
# via PartSeg (setup.cfg)
Expand All @@ -84,7 +84,7 @@ idna==3.4
# via requests
imagecodecs==2023.9.18
# via PartSeg (setup.cfg)
imageio==2.31.5
imageio==2.31.6
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
Expand Down Expand Up @@ -144,7 +144,7 @@ locket==1.0.0
# via partd
lxml==4.9.3
# via PartSeg (setup.cfg)
magicgui==0.7.3
magicgui==0.8.0
# via
# PartSeg (setup.cfg)
# napari
Expand All @@ -166,22 +166,21 @@ mypy-extensions==1.0.0
# via psygnal
napari==0.4.18
# via PartSeg (setup.cfg)
napari-console==0.0.8
napari-console==0.0.9
# via napari
napari-plugin-engine==0.2.0
# via
# napari
# napari-console
# napari-svg
napari-svg==0.1.10
# via napari
nest-asyncio==1.5.8
# via ipykernel
networkx==3.1
networkx==3.2
# via scikit-image
nme==0.1.8
# via PartSeg (setup.cfg)
npe2==0.7.2
npe2==0.7.3
# via
# -r requirements/version_denylist.txt
# napari
Expand Down Expand Up @@ -241,7 +240,7 @@ pexpect==4.8.0
# via ipython
pickleshare==0.7.5
# via ipython
pillow==10.1.0
pillow==10.0.1
# via
# imageio
# napari
Expand Down Expand Up @@ -273,6 +272,8 @@ ptyprocess==0.7.0
# via pexpect
pure-eval==0.2.2
# via stack-data
pyconify==0.1.5
# via superqt
pydantic==1.10.13
# via
# -r requirements/version_denylist.txt
Expand Down Expand Up @@ -319,13 +320,13 @@ pyside2==5.13.2
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
pyside6==6.5.3 ; python_version >= "3.10"
pyside6==6.6.0 ; python_version >= "3.10"
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
pyside6-addons==6.5.3
pyside6-addons==6.6.0
# via pyside6
pyside6-essentials==6.5.3
pyside6-essentials==6.6.0
# via
# pyside6
# pyside6-addons
Expand Down Expand Up @@ -380,6 +381,7 @@ requests==2.31.0
# via
# PartSeg (setup.cfg)
# pooch
# pyconify
# sphinx
rich==13.6.0
# via npe2
Expand All @@ -402,7 +404,7 @@ sentry-sdk==1.32.0
# PartSeg (setup.cfg)
shiboken2==5.13.2
# via pyside2
shiboken6==6.5.3
shiboken6==6.6.0
# via
# pyside6
# pyside6-addons
Expand Down Expand Up @@ -486,7 +488,7 @@ typing-extensions==4.8.0
# typer
tzdata==2023.3
# via pandas
urllib3==2.0.6
urllib3==2.0.7
# via
# requests
# sentry-sdk
Expand All @@ -501,7 +503,7 @@ wrapt==1.15.0
# via napari
xlrd==2.0.1
# via PartSeg (setup.cfg)
xlsxwriter==3.1.8
xlsxwriter==3.1.9
# via PartSeg (setup.cfg)
zipp==3.17.0
# via importlib-metadata
Expand Down
24 changes: 13 additions & 11 deletions requirements/constraints_py3.8.txt
Original file line number Diff line number Diff line change
Expand Up @@ -34,13 +34,13 @@ certifi==2023.7.22
# napari
# requests
# sentry-sdk
charset-normalizer==3.3.0
charset-normalizer==3.3.1
# via requests
click==8.1.7
# via
# dask
# typer
cloudpickle==2.2.1
cloudpickle==3.0.0
# via dask
comm==0.1.4
# via ipykernel
Expand Down Expand Up @@ -74,7 +74,7 @@ fonticon-fontawesome6==6.4.0
# via PartSeg (setup.cfg)
freetype-py==2.4.0
# via vispy
fsspec==2023.9.2
fsspec==2023.10.0
# via dask
h5py==3.10.0
# via PartSeg (setup.cfg)
Expand All @@ -86,7 +86,7 @@ idna==3.4
# via requests
imagecodecs==2023.3.16
# via PartSeg (setup.cfg)
imageio==2.31.5
imageio==2.31.6
# via
# -r requirements/version_denylist.txt
# PartSeg (setup.cfg)
Expand Down Expand Up @@ -155,7 +155,7 @@ locket==1.0.0
# via partd
lxml==4.9.3
# via PartSeg (setup.cfg)
magicgui==0.7.3
magicgui==0.8.0
# via
# PartSeg (setup.cfg)
# napari
Expand All @@ -177,12 +177,11 @@ mypy-extensions==1.0.0
# via psygnal
napari==0.4.18
# via PartSeg (setup.cfg)
napari-console==0.0.8
napari-console==0.0.9
# via napari
napari-plugin-engine==0.2.0
# via
# napari
# napari-console
# napari-svg
napari-svg==0.1.10
# via napari
Expand All @@ -192,7 +191,7 @@ networkx==3.1
# via scikit-image
nme==0.1.8
# via PartSeg (setup.cfg)
npe2==0.7.2
npe2==0.7.3
# via
# -r requirements/version_denylist.txt
# napari
Expand Down Expand Up @@ -253,7 +252,7 @@ pexpect==4.8.0
# via ipython
pickleshare==0.7.5
# via ipython
pillow==10.1.0
pillow==10.0.1
# via
# imageio
# napari
Expand Down Expand Up @@ -287,6 +286,8 @@ ptyprocess==0.7.0
# via pexpect
pure-eval==0.2.2
# via stack-data
pyconify==0.1.5
# via superqt
pydantic==1.10.13
# via
# -r requirements/version_denylist.txt
Expand Down Expand Up @@ -398,6 +399,7 @@ requests==2.31.0
# via
# PartSeg (setup.cfg)
# pooch
# pyconify
# sphinx
rich==13.6.0
# via npe2
Expand Down Expand Up @@ -512,7 +514,7 @@ typing-extensions==4.8.0
# typer
tzdata==2023.3
# via pandas
urllib3==2.0.6
urllib3==2.0.7
# via
# requests
# sentry-sdk
Expand All @@ -527,7 +529,7 @@ wrapt==1.15.0
# via napari
xlrd==2.0.1
# via PartSeg (setup.cfg)
xlsxwriter==3.1.8
xlsxwriter==3.1.9
# via PartSeg (setup.cfg)
zipp==3.17.0
# via
Expand Down
Loading

0 comments on commit a6199f9

Please sign in to comment.