Update bundle dependencies.

4DNucleome · May 20, 2024 · 1bfac57 · 1bfac57
1 parent 4be4b27
commit 1bfac57
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Showing 11 changed files with 961 additions and 198 deletions.
diff --git a/requirements/constraints_py3.10.txt b/requirements/constraints_py3.10.txt
@@ -6,10 +6,11 @@ altgraph==0.17.4
     # via pyinstaller
 annotated-types==0.6.0
     # via pydantic
-app-model==0.2.6
+app-model==0.2.7
     # via napari
 appdirs==1.4.4
     # via
+    #   partseg (pyproject.toml)
     #   napari
     #   npe2
 asttokens==2.4.1
@@ -40,14 +41,17 @@ cloudpickle==3.0.0
 comm==0.2.2
     # via ipykernel
 coverage==7.5.1
+    # via partseg (pyproject.toml)
 czifile==2019.7.2
-dask==2024.5.0
+    # via partseg (pyproject.toml)
+dask==2024.5.1
     # via napari
 debugpy==1.8.1
     # via ipykernel
 decorator==5.1.1
     # via ipython
 defusedxml==0.7.1
+    # via partseg (pyproject.toml)
 docstring-parser==0.16
     # via magicgui
 docutils==0.21.2
@@ -61,20 +65,25 @@ exceptiongroup==1.2.1
 executing==2.0.1
     # via stack-data
 fonticon-fontawesome6==6.4.0
+    # via partseg (pyproject.toml)
 freetype-py==2.4.0
     # via vispy
-fsspec==2024.3.1
+fsspec==2024.5.0
     # via dask
 h5py==3.11.0
+    # via partseg (pyproject.toml)
 heapdict==1.0.1
     # via cachey
 hsluv==5.0.4
     # via vispy
 idna==3.7
     # via requests
 imagecodecs==2024.1.1
+    # via partseg (pyproject.toml)
 imageio==2.34.1
     # via
+    #   -r requirements/version_denylist.txt
+    #   partseg (pyproject.toml)
     #   napari
     #   napari-svg
     #   scikit-image
@@ -90,10 +99,12 @@ iniconfig==2.0.0
     # via pytest
 ipykernel==6.29.4
     # via
+    #   partseg (pyproject.toml)
     #   napari-console
     #   qtconsole
 ipython==8.24.0
     # via
+    #   partseg (pyproject.toml)
     #   ipykernel
     #   napari-console
 jedi==0.19.1
@@ -120,16 +131,23 @@ lazy-loader==0.4
     #   napari
     #   scikit-image
 local-migrator==0.1.10
-    # via nme
+    # via
+    #   partseg (pyproject.toml)
+    #   nme
 locket==1.0.0
     # via partd
-lxml==5.2.1
-    # via lxml-html-clean
+lxml==5.2.2
+    # via
+    #   partseg (pyproject.toml)
+    #   lxml-html-clean
 lxml-html-clean==0.1.1
     # via lxml
 magicgui==0.8.2
-    # via napari
+    # via
+    #   partseg (pyproject.toml)
+    #   napari
 mahotas==1.4.15
+    # via partseg (pyproject.toml)
 markdown-it-py==3.0.0
     # via rich
 markupsafe==2.1.5
@@ -143,6 +161,7 @@ mdurl==0.1.2
 mpmath==1.3.0
     # via sympy
 napari==0.4.19.post1
+    # via partseg (pyproject.toml)
 napari-console==0.0.9
     # via napari
 napari-plugin-engine==0.2.0
@@ -156,10 +175,14 @@ nest-asyncio==1.6.0
 networkx==3.3
     # via scikit-image
 nme==0.1.8
+    # via partseg (pyproject.toml)
 npe2==0.7.5
-    # via napari
+    # via
+    #   -r requirements/version_denylist.txt
+    #   napari
 numpy==1.26.4
     # via
+    #   partseg (pyproject.toml)
     #   czifile
     #   dask
     #   h5py
@@ -178,9 +201,12 @@ numpy==1.26.4
 numpydoc==1.7.0
     # via napari
 oiffile==2023.8.30
+    # via partseg (pyproject.toml)
 openpyxl==3.1.2
+    # via partseg (pyproject.toml)
 packaging==24.0
     # via
+    #   partseg (pyproject.toml)
     #   build
     #   dask
     #   ipykernel
@@ -196,13 +222,17 @@ packaging==24.0
     #   sphinx
     #   vispy
 pandas==2.2.2
-    # via napari
+    # via
+    #   partseg (pyproject.toml)
+    #   napari
 parso==0.8.4
     # via jedi
 partd==1.4.2
     # via dask
 partsegcore-compiled-backend==0.15.6
+    # via partseg (pyproject.toml)
 partsegdata==0.10.0
+    # via partseg (pyproject.toml)
 pexpect==4.9.0
     # via ipython
 pillow==10.3.0
@@ -212,7 +242,7 @@ pillow==10.3.0
     #   scikit-image
 pint==0.23
     # via napari
-platformdirs==4.2.1
+platformdirs==4.2.2
     # via
     #   jupyter-core
     #   pooch
@@ -230,6 +260,7 @@ psutil==5.9.8
     #   napari
 psygnal==0.11.1
     # via
+    #   partseg (pyproject.toml)
     #   app-model
     #   magicgui
     #   napari
@@ -242,6 +273,7 @@ pyconify==0.1.6
     # via superqt
 pydantic==2.7.1
     # via
+    #   partseg (pyproject.toml)
     #   app-model
     #   napari
     #   npe2
@@ -252,44 +284,62 @@ pydantic-core==2.18.2
     # via pydantic
 pygments==2.18.0
     # via
+    #   partseg (pyproject.toml)
     #   ipython
     #   napari
     #   qtconsole
     #   rich
     #   sphinx
     #   superqt
 pyinstaller==6.6.0
-pyinstaller-hooks-contrib==2024.5
+    # via partseg (pyproject.toml)
+pyinstaller-hooks-contrib==2024.6
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
 pyopengl-accelerate==3.1.7
+    # via partseg (pyproject.toml)
 pyproject-hooks==1.1.0
     # via build
 pyqt5==5.15.10
+    # via
+    #   -r requirements/version_denylist.txt
+    #   partseg (pyproject.toml)
 pyqt5-qt5==5.15.2
     # via pyqt5
 pyqt5-sip==12.13.0
-    # via pyqt5
+    # via
+    #   -r requirements/version_denylist.txt
+    #   pyqt5
 pyqt6==6.7.0
+    # via partseg (pyproject.toml)
 pyqt6-qt6==6.7.0
     # via pyqt6
 pyqt6-sip==13.6.0
     # via pyqt6
 pyside2==5.15.2.1
+    # via
+    #   -r requirements/version_denylist.txt
+    #   partseg (pyproject.toml)
 pyside6==6.7.0
+    # via
+    #   -r requirements/version_denylist.txt
+    #   partseg (pyproject.toml)
 pyside6-addons==6.7.0
     # via pyside6
 pyside6-essentials==6.7.0
     # via
     #   pyside6
     #   pyside6-addons
-pytest==8.2.0
+pytest==8.2.1
     # via
+    #   partseg (pyproject.toml)
     #   pytest-qt
     #   pytest-timeout
 pytest-qt==4.4.0
+    # via partseg (pyproject.toml)
 pytest-timeout==2.3.1
+    # via partseg (pyproject.toml)
 python-dateutil==2.9.0.post0
     # via
     #   jupyter-client
@@ -307,10 +357,14 @@ pyzmq==26.0.3
     #   jupyter-client
     #   qtconsole
 qtawesome==1.3.1
+    # via partseg (pyproject.toml)
 qtconsole==5.5.2
-    # via napari-console
+    # via
+    #   partseg (pyproject.toml)
+    #   napari-console
 qtpy==2.4.1
     # via
+    #   partseg (pyproject.toml)
     #   magicgui
     #   napari
     #   napari-console
@@ -323,6 +377,7 @@ referencing==0.35.1
     #   jsonschema-specifications
 requests==2.31.0
     # via
+    #   partseg (pyproject.toml)
     #   pooch
     #   pyconify
     #   sphinx
@@ -335,12 +390,18 @@ rpds-py==0.18.1
     #   jsonschema
     #   referencing
 scikit-image==0.23.2
-    # via napari
+    # via
+    #   partseg (pyproject.toml)
+    #   napari
 scipy==1.13.0
     # via
+    #   partseg (pyproject.toml)
     #   napari
     #   scikit-image
-sentry-sdk==2.1.1
+sentry-sdk==2.2.0
+    # via
+    #   -r requirements/version_denylist.txt
+    #   partseg (pyproject.toml)
 setuptools==69.5.1
     # via
     #   pyinstaller
@@ -355,8 +416,10 @@ shiboken6==6.7.0
     #   pyside6-addons
     #   pyside6-essentials
 simpleitk==2.3.1
+    # via partseg (pyproject.toml)
 six==1.16.0
     # via
+    #   partseg (pyproject.toml)
     #   asttokens
     #   python-dateutil
 snowballstemmer==2.2.0
@@ -377,15 +440,18 @@ sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
 stack-data==0.6.3
     # via ipython
-superqt==0.6.5
+superqt==0.6.6
     # via
+    #   partseg (pyproject.toml)
     #   magicgui
     #   napari
 sympy==1.12
+    # via partseg (pyproject.toml)
 tabulate==0.9.0
     # via numpydoc
-tifffile==2024.5.3
+tifffile==2024.5.10
     # via
+    #   partseg (pyproject.toml)
     #   czifile
     #   napari
     #   oiffile
@@ -411,6 +477,7 @@ tornado==6.4
 tqdm==4.66.4
     # via napari
 traceback-with-variables==2.0.4
+    # via partseg (pyproject.toml)
 traitlets==5.14.3
     # via
     #   comm
@@ -441,13 +508,16 @@ urllib3==2.2.1
     #   sentry-sdk
 vispy==0.14.2
     # via
+    #   partseg (pyproject.toml)
     #   napari
     #   napari-svg
 wcwidth==0.2.13
     # via prompt-toolkit
 wrapt==1.16.0
     # via napari
 xlrd==2.0.1
+    # via partseg (pyproject.toml)
 xlsxwriter==3.2.0
-zipp==3.18.1
+    # via partseg (pyproject.toml)
+zipp==3.18.2
     # via importlib-metadata