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Detecting Minor SNV - Missing $autopar variable #2
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Hi iek, BTW, does the example Nanopore dataset work in your machine? It is at https://www.dropbox.com/sh/umi03t3eendcktf/AABhXy2cNfQAr0wBike87Kc0a?dl=0 (the ont_kpneumoniae folder) |
Hi Dr. Feng, Would it be okay if I sent you an email with the information (to the address you have listed in your Github)? Thank you so much. |
Yes, please send them to [email protected]. |
Thank you! I just sent you an email. |
Hi Dr. Feng, when detecting minor SNVs, the program runs but does show a message of "igda_pipe_detect_ont: line 114: [: missing `]'". I looked into line 114 of igda_pipe_detect_ont, and it calls a $auto_par variable that is set to $OPTARG. Do you know what this error message is saying? I thought I inputted all required variables, and the program seems to be running smoothly, but I wanted to make sure. Thank you so much!
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