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I opened #1268 to prevent installation of the SafeInt files and directories.
Regarding the empty folders with spicy-plugin in their name, I can only reproduce this if I change a build with Spicy enabled (default) to one disabled with --disable-spicy after the fact; I do not see this issue in a clean build.
I see an empty directory include/zeek/script_opt/CPP/maint as well, but this is something which should be fixed in Zeek proper.
Working on the FreeBSD zeek port, it was reported that test files from the bundled version of spicy are being installed that should not. For example:
There are also a number of empty directories installed:
It would be nice to eliminate these.
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