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Migrate to `incrementalmerkletree 0.5` #3027

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Run time

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Job	Run time
Build target wasm32-wasi	3m 11s
Bitrot check	2m 36s
Book tests	18s
Code coverage	28m 4s
Intra-doc links	2m 41s
Rustfmt	18s
Test on ubuntu-latest	2m 36s
Test on windows-latest	2m 38s
Test on macOS-latest	2m 36s
	44m 58s